Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3485 ATGGGACACGGTGCTGAAAAAGGAAGGCCCTTCAAAAAGTTCAAAGCCGCTGCTAAATTCGAAGATTCCAAAAAAGGATTCGCCGATGATGATGATGATGCTTATGGCGGCGATGATGCTTACGATGATGACGAAGGAAAAACAAAGGATTTTAGCAAATTAGAATTGAAACCGGATCACACAAATCGTCCTCTCTGGGCTTGTGACAATGGCCGCATTTTCCTTGAGACTTTCTCTCCTTTGTACAAACAAGCTTATGATTTTCTCATTGCCATCGCCGAGCCCGTTTGCAGGCCGGAGTCGATGCACGAATACAATCTTACACCGCATTCGCTGTATGCTGCGGTTTCGGTTGGTCTAGAAACTGAAACAATTATAGCAGTTTTGAATAAGTTGTCTAAGACCAAGCTTCCTAAAGAGATGATTAGGTTTATCCATGATTCTACTGCAAATTATGGGAAAGTCAAACTCGTTCTTAAGAAGAATCGTTACTATGTGGAATCTCCATTTCCAGAGGTATTGAAGACATTGCTCAGGGATGATGCTATATCGAGAGCAAGGATCACTTCTGAGGGTACTCATGGAGATGGATTTACAATCAGCAAAGCACTAGGTGAGATCGAAGGCACTCATGACGAGTTGCTAAATCAAGCAGAAGTAGCGGCTGTTGCAGAAGAGAAAGAAGCTCATGCATTCGAAATTGATCCGTCTCAGGTTGAAAATGTAAAGCAACGTTGTTTGCCAAATGCCTTAAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCGGACCTCGAGATGGAACTAAAGCCCCAAGCACAACCAAGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCCGGTATCATAGTTCTACCTTGTGGTGCCGGAAAGTCCCTAGTTGGTGTTTCAGCAGCTTCCCGGATAAAAAAGAGCTGTCTTTGTTTGGCAACAAATGCTGTCTCTGTGGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGAGATGAACAAATATGTCGTTTCACATCTGACAGCAAAGAGAGATTCCGTGGTAACGCTGGAGTTGTTGTGACAACATATAATATGGTTGCCTTTGGGGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTGCTTATGGACGAGGTGCATGTGGTTCCTGCCCATATGTTTCGAAAAGTCATTAGCATCACTAAATCTCACTGCAAACTTGGGCTCACAGCTACACTTGTGAGAGAGGATGAACGTATTACAGATCTGAATTTCCTAATTGGTCCCAAACTGTATGAGGCAAATTGGTTGGATCTTGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAATTTTTCGCTGAGTATCTAAAGAAAGAGAACTCCAAGAAGAGACAGGCCCTTTATGTGATGAATCCCAATAAATTCCGAGCATGTGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTGTTTGCTGATAATCTTTTTGCTCTCACCGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAGGCATTCAAAACCAGCAAAGACGTAAATACTGTTTTTCTTTCCAAGGTCGGTGACAACTCAATCGATATTCCTGAAGCAAATGTTATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCACAGCGTCTGGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGATAGGATGGCTGGTGGCAAAGAGGAATATAATGCATTTTTTTATTCCCTTGTGTCGACCGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTACAGCTTTAAGGTAATTACAAGCTTGCCTCCATCTGATGAAGGATCTCGCTTGCACTATCATCATCTCGATGATCAACTGGCACTACTCGGAAAGGTATTGAATGCTGGTGATGATGCAGTTGGATTAGAGCAACTAGAAGATGATGCAGATGAATTAGCTCTTAAAAGTGCTCGTCGTTCTCAAGGATCGATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTATATGGAGTACAGTACCGGGCGTAACAAAGGCCAACAGATCAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACCACTTATTTAGAAAACGATTTGGCTCAACCTAA 2304 0.4206 MGHGAEKGRPFKKFKAAAKFEDSKKGFADDDDDAYGGDDAYDDDEGKTKDFSKLELKPDHTNRPLWACDNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIRFIHDSTANYGKVKLVLKKNRYYVESPFPEVLKTLLRDDAISRARITSEGTHGDGFTISKALGEIEGTHDELLNQAEVAAVAEEKEAHAFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLEMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLHYHHLDDQLALLGKVLNAGDDAVGLEQLEDDADELALKSARRSQGSMSAMSGAKGMVYMEYSTGRNKGQQIKSKPKDPAKRHHLFRKRFGST* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3485 767 PANTHER DNA REPAIR HELICASE XPB1-LIKE 4 764 - -
Mtr8g3485 767 CDD DEXHc_XPB 272 441 - -
Mtr8g3485 767 SMART ultradead3 276 457 IPR014001 -
Mtr8g3485 767 Pfam Helicase conserved C-terminal domain 65 188 IPR032830 -
Mtr8g3485 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 455 IPR027417 -
Mtr8g3485 767 MobiDBLite consensus disorder prediction 751 767 - -
Mtr8g3485 767 CDD SF2_C_XPB 472 636 - -
Mtr8g3485 767 Pfam Type III restriction enzyme, res subunit 279 435 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mtr8g3485 767 MobiDBLite consensus disorder prediction 739 767 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 63 83 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 149 168 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 261 287 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 292 314 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 399 419 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 465 487 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 503 518 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 523 545 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 570 588 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 589 614 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 626 649 - -
Mtr8g3485 767 PRINTS Xeroderma pigmentosum group B protein signature 717 736 - -
Mtr8g3485 767 TIGRFAM rad25: DNA repair helicase rad25 50 762 IPR001161 GO:0003678|GO:0006289|GO:0006367
Mtr8g3485 767 Pfam ERCC3/RAD25/XPB C-terminal helicase 461 709 IPR032438 -
Mtr8g3485 767 MobiDBLite consensus disorder prediction 25 45 - -
Mtr8g3485 767 Gene3D - 462 702 IPR027417 -
Mtr8g3485 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 674 IPR001650 -
Mtr8g3485 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 707 IPR027417 -
Mtr8g3485 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 453 IPR014001 -
Mtr8g3485 767 Gene3D - 269 461 IPR027417 -
Mtr8g3485 767 SMART helicmild6 536 614 IPR001650 -
Mtr8g3485 767 PANTHER RAD25/XP-B DNA REPAIR HELICASE 4 764 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3485 K10843 - gmx:100789550 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3485 8 45322941 45331399 Mtr8g3485 8 45322941 45331399 ECH