Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3424 ATGTCTCTCATTAAAATATCATTGTTGTCTCTCTGCTTGATATCTGCTCAGGCAGCTAGGTTTGACATCGTAAACCAATGCGCCTACACCGTGTGGCCAGCGGCCACACCCAGCGGTGGAGGTCGGCAGTTGGACCGAGGCCAATCATGGCCTCTGGACGTCCCAGCTGGAACCTCAATAGGTCGAATTTGGGGCCGAACTGGTTGCAACTTCGACGGTTCAGGCCGTGGTAGTTGTCAAACTGGTGATTGCGGTGGTGCCCTCAGTTGCAGCTTATCCGGTAAAAGTCCGCTCACTCTTACCGAATTCACACTTAATGGTTTCAACAATCAGGACTCCATTGATTTATCTGTGATTGATGGTTTCAACATTCCAATGCAGCTTAGTTCAACCTCTAATGCATGCAACAAAGTATTAAACTGCAGGGATTCTAATTGCCCTGATGCTTATCATCACCCCAATGATGTTAAAACGAATACATGCCCAGGTGGTACCAACTACAGAGTTGTCTTTTGTCCTTGA 522 0.4751 MSLIKISLLSLCLISAQAARFDIVNQCAYTVWPAATPSGGGRQLDRGQSWPLDVPAGTSIGRIWGRTGCNFDGSGRGSCQTGDCGGALSCSLSGKSPLTLTEFTLNGFNNQDSIDLSVIDGFNIPMQLSSTSNACNKVLNCRDSNCPDAYHHPNDVKTNTCPGGTNYRVVFCP* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3424 173 Gene3D Thaumatin 18 143 IPR037176 -
Mtr8g3424 173 CDD TLP-P 21 173 - -
Mtr8g3424 173 Pfam Thaumatin family 25 137 IPR001938 -
Mtr8g3424 173 PANTHER THAUMATIN-LIKE PROTEIN 7 173 - -
Mtr8g3424 173 PRINTS Pathogenesis-related protein signature 20 32 IPR001938 -
Mtr8g3424 173 PRINTS Pathogenesis-related protein signature 40 49 IPR001938 -
Mtr8g3424 173 PRINTS Pathogenesis-related protein signature 62 73 IPR001938 -
Mtr8g3424 173 PRINTS Pathogenesis-related protein signature 75 104 IPR001938 -
Mtr8g3424 173 PRINTS Pathogenesis-related protein signature 112 128 IPR001938 -
Mtr8g3424 173 PRINTS Pathogenesis-related protein signature 163 172 IPR001938 -
Mtr8g3424 173 ProSitePatterns Thaumatin family signature. 75 90 IPR017949 -
Mtr8g3424 173 ProSiteProfiles Thaumatin family profile. 18 173 IPR001938 -
Mtr8g3424 173 PIRSF PR5 142 173 IPR001938 -
Mtr8g3424 173 PIRSF PR5 1 144 IPR001938 -
Mtr8g3424 173 SMART tha2 21 173 IPR001938 -
Mtr8g3424 173 Gene3D Thaumatin 144 173 IPR037176 -
Mtr8g3424 173 SUPERFAMILY Osmotin, thaumatin-like protein 19 173 IPR037176 -
Mtr8g3424 173 PANTHER OS03G0233200 PROTEIN 7 173 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3424 Mtr-Chr8 44813073 44813826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3424 8 126 Receptor kinase-like Gene Family AT5G38280 42.636 1.03e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3424 - - mtr:MTR_8g096910 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3424 8 44813073 44813826 Mtr8g3424 8 44813073 44813826 ECH