Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3409 ATGGACCTTATTCATCAGTTCCTGAACATAGTAGCTCCTCCATTCACCTTCTTTTCCTTACTCCTTTTCTTACCACCATATTGGACCTTCAAATTCTTCCTTTCCATTATCTTTGCATTCTTCCCTGAAAATGTCGCTGGTAAAGTTGTTCACATCACTGGTGCTTCCTCTGGTATTGGAGAGCATTTGGCTTACGAGTATGCTAAGAGAGGTGCACGATTAGCACTTTCTGCTAGAAGAGACACAGCACTGCGTGAAGTTGCTGATAGAGCTCGTGATTGTGGTTCCCCTGATGTTATTATAATGCGTGCAGATGTTTCCAAAGTTGATGATTGTAGGCGTTTAGTCGATGAAACTGTTAACCATTTTGGTAGACTGGATCATTTGGTAAACAATGCTGCAATTAGTGCTGCCATGATGTTTGAAGGTGTAACTGATATCACCAATTGGAGACCTCTCATGGACACAAACTTTTGGGGATCAGTTTACACCACCCGTTTTGCTTTAACACACCTCAGAAACAGTAGAGGCAAAATTGTGGTCCTTTCATCAATTGATTCTTGGATGCCAGCACCCAGAAGGAGTATATATAATGCAAGCAAAGCAGCATTAGTAAGTCTTTATGAAACATTGAGGGTTGAAGTTGGAGCAGACGTAGGTGTCACAATTGTTACACCAGGTTACATAGAATCTGAATTGACCAAAGGCAAAGTCTTATTGCCACCAGAAGGCAAGATGGGCGTGGACCAAGATATGAGAGATGTTGAAGTGAGTGCCACGCCAGTGGGATCAGTTAGTGAATGTGCAAAATCAATAGTGAATGGTACATTGAGGGGAGATAGATACTTGACTGCACCAGCTTGGTTTAGAATGACATATGTTGTGAAAGTGTTATGTCCAGAATTGTTGGAGTGGGGTTTCAGAATCTTGTACTTGACTAGATCAAGTAATACTCCAGCAAGAGAAGCACCTAGCAAAAAGATTTTGGATGCTACTGGAATCAAAAACGTGTTCTATCCATCTTCAATTCGATCTCCTGAAGTCAAGACTGAATGA 1056 0.4148 MDLIHQFLNIVAPPFTFFSLLLFLPPYWTFKFFLSIIFAFFPENVAGKVVHITGASSGIGEHLAYEYAKRGARLALSARRDTALREVADRARDCGSPDVIIMRADVSKVDDCRRLVDETVNHFGRLDHLVNNAAISAAMMFEGVTDITNWRPLMDTNFWGSVYTTRFALTHLRNSRGKIVVLSSIDSWMPAPRRSIYNASKAALVSLYETLRVEVGADVGVTIVTPGYIESELTKGKVLLPPEGKMGVDQDMRDVEVSATPVGSVSECAKSIVNGTLRGDRYLTAPAWFRMTYVVKVLCPELLEWGFRILYLTRSSNTPAREAPSKKILDATGIKNVFYPSSIRSPEVKTE* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3409 351 PANTHER RETINOL DEHYDROGENASE-RELATED 1 343 - -
Mtr8g3409 351 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Mtr8g3409 351 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Mtr8g3409 351 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Mtr8g3409 351 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Mtr8g3409 351 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Mtr8g3409 351 Gene3D - 38 315 - -
Mtr8g3409 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 311 IPR036291 -
Mtr8g3409 351 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 48 232 - -
Mtr8g3409 351 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Mtr8g3409 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Mtr8g3409 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Mtr8g3409 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Mtr8g3409 351 Pfam short chain dehydrogenase 48 236 IPR002347 -
Mtr8g3409 351 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3409 Mtr-Chr8 44663852 44665494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3409 43 234 Acyl Lipid Metabolism Gene Families AT1G24360 29.592 6.90e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3409 K22418 - zju:107417988 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3409 8 44663852 44665494 Mtr8g3409 8 44663852 44665494 ECH