Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3378 ATGGGAAATTGCTGCTCCGATGTCGCCGGTGGCCGCACGGCAATCGGCGGAACTGCCGGAGGTCTTCTGAATCCGGGAAACACTTCCAACGACGCCGTCGATAATTTCTTCAAGTCTCGTGGCTACCAAGGTCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGTTTGCGTGATCGAGATGTGCTCTCTAAGAGTGATCCAATAATGGTTCTTTATGCAAAAGGAAAAAATGGAGCACTTGAGGAACTTGGCCGGACAGAAGTAGTTTTGAATTCGTTGAGTCCGACATGGATTACTAAACAAACTCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCATGTTTATGATGTTGATACTCAGTTTCACAACGCAGACGTGAAGATACTTAAGTTAGAAGAACAACAATTTCTTGGTGAGGCAACTTGTGCATTATCTGAGATAATTACAAAGCGTGATCGATCATTGACATTAGATTTACTCAGACAAGATTCTACCAGATCTGGCAACTCACAAAAATGTGGGAAGCTCAAAGTGTATGCTGAGGAATGTGTTGGCTCAAAGACTACAGTAGAGATGATACTCAGGTGTACAGATTTGGAATATAGGGATCTATTCTCAAAGAGTGATCCCTTTTTATTAGTATCAAAAGTTGTGGAAAATGGTGACCATATTCCTATTTGCAAAACAGAAGCTATTAAAAATGATCACAATCCAACATGGAAGCAAGTGTTCTTGAATGTTCAACAAGTAGGAAGCAAGGAAAATCCTTTGTTAATAGAGTGCTACAACTTCAATAGCAATGGAAAACATGATTTGTTGGGAAAACTGCAGACATCTCTGGTGGAGCTGGAGAAGCTCTATTCTGGTGGCCAAGGAGAACATTTATTTTTGTCTCCTGCCGTGGGTCATGATTCTCAGACCAAGGTATTAAAAAGCCGGCTATTTGTGGACAAATTTTCTGAAAGTATTCAATATACTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGCAATTCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATTCATACCAAAGAGCAATTATTGAGGTTGGAGAGGTGTTACAGTTTTATGATTCAGACAAGCGATTTCCTACGTGGGGATTTGGAGCACGACCGATTGATGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAATACTTACTGTGAGGTAGAAGGCATTCAAGGAATTATGATGGCATACACAAGTGCTCTGCTTAACGTTTCTCTCGCAGGACCAACACTTTTTGGACCTGTCATAAATAATGCTGCAATTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAATACTTTGTCCTGTTGATAATCACAGATGGAGTTGTGACGGATCTCCAAGAAACAAAAGATGCACTTGTTAAAGCATCGGACCTACCATTATCAATCCTTATCGTTGGCGTAGGAGGAGCTGATTTCAAAGAGATGGAGATCTTGGATGCAGACAAAGGAGATAGGCTTGAAAGTTCATCTGGACGTGTTGCTTCACGTGATATAGTACAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAATTACCCACTCAATTTTTAGCTTACATGCGGAGCAGAAATATCCAACCAAATCTCTAG 1740 0.4098 MGNCCSDVAGGRTAIGGTAGGLLNPGNTSNDAVDNFFKSRGYQGLFSQIELSFSASGLRDRDVLSKSDPIMVLYAKGKNGALEELGRTEVVLNSLSPTWITKQTLIYHFEVVQVLVFHVYDVDTQFHNADVKILKLEEQQFLGEATCALSEIITKRDRSLTLDLLRQDSTRSGNSQKCGKLKVYAEECVGSKTTVEMILRCTDLEYRDLFSKSDPFLLVSKVVENGDHIPICKTEAIKNDHNPTWKQVFLNVQQVGSKENPLLIECYNFNSNGKHDLLGKLQTSLVELEKLYSGGQGEHLFLSPAVGHDSQTKVLKSRLFVDKFSESIQYTFLDYLAGGFELNFMVAIDFTASNGNSRLPDSLHYIDPSGRPNSYQRAIIEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSNTYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVINNAAIIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGDRLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYMRSRNIQPNL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3378 579 Gene3D C2 domain 52 194 IPR035892 -
Mtr8g3378 579 Pfam Copine 362 577 IPR010734 -
Mtr8g3378 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Mtr8g3378 579 SMART C2_3c 48 161 IPR000008 -
Mtr8g3378 579 SMART C2_3c 198 300 IPR000008 -
Mtr8g3378 579 Pfam C2 domain 54 158 IPR000008 -
Mtr8g3378 579 Pfam C2 domain 198 297 IPR000008 -
Mtr8g3378 579 Gene3D C2 domain 195 318 IPR035892 -
Mtr8g3378 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 164 IPR035892 -
Mtr8g3378 579 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Mtr8g3378 579 SMART VWA_4 341 538 IPR002035 -
Mtr8g3378 579 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Mtr8g3378 579 SUPERFAMILY vWA-like 342 524 IPR036465 -
Mtr8g3378 579 CDD vWA_copine_like 313 566 IPR010734 -
Mtr8g3378 579 CDD C2A_Copine 47 172 - -
Mtr8g3378 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 293 IPR035892 -
Mtr8g3378 579 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Mtr8g3378 579 CDD C2B_Copine 195 290 IPR037768 -
Mtr8g3378 579 PANTHER COPINE 1 577 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3378 Mtr-Chr8 44261497 44272726 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3378 - - gmx:100807801 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3378 8 44261497 44272726 Mtr8g3378 8 44261497 44272726 ECH