Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3365 ATGGGAGAGCGAAAGCGAATTCCTCTCGGAATTTTTGCAGTGATCTTCTTCGTAATTTGTTCTTCATCGTTACACCTTCTTCGTGCTTCCGATGATGCCGATGACGCGATCTTCTACGAATCATTTGATGAGGATTTTGATGATCGTTGGATTGTTTCCGATAAGGATGAATATAACGGCATCTGGAAGCATTCAAAGAGTGAGGGGCATGAAGATTATGGGCTTCTTGTCAGTGAGAAAGCAAGAAAGTATGCTGTAGTTAAAGAACTTGATGAGCCTGTGATTCTTAAGGATGAATCAGTTGTTCTTCAGTTTGAGACTCGCCTTCAGAATGGCCTCGAATGTGGTGGTGCATATCTAAAATATCTTCGACCACAGGAAGCTGGTTGGAAACCCAAGGAATTTGACAACGATTCTCCCTATTCTATCATGTTTGGTCCTGACAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGAATCCGAAGAGTGGGGAGTATGTTGAACACCATCTCAAGTTTCCCCCATCTGTTCCTTCTGACAAGCTATCTCACGTGTACACTGCTATTTTGAAACCCGACAATGAGTTGCAAATTTTGATTGATGGGGAACAGAAGAAAAAGGCAAATTTCTTATCTTCTGAGGATTTTGAGCCTTCCCTTATCCCTCCCAAGACAATCCCAGATCCTGAAGATAAGAAACCTGAGGACTGGGACGAGAGAGAGAAAATTCCAGACCCAAGTGCAGTAAAGCCTGATGACTGGGATGAGGATGCACCCTTGGAAATTCTTGATGAAGAAACTGTGAAACCTGAAGGATGGTTAGATGATGAGCCTGAGGAGATAGATGACCCAGAGGCTACAAAACCAGAAGATTGGGACGATGAAGAGGATGGTGAATGGGAAGCCCCTAAGATTACTAACCCAAATTGTGAAACAGCCCCTGGTTGTGGTGAGTGGAAAAGGCCAATGAAGAAGAATCCAGCATACAAGGGAAAATGGCATGCCCCCCTAATTAAAAATCCAGCTTATAAGGGTATATGGAAGCCTCAGGATATTCCAAACCCTGATTACTTTGAGCTTAAAAAACCCGATTTTGAGCCTATTGCAGCTATTGGTATTGAGATTTGGACAATGCAGGATGGCATATTGTTTGACAATATTTTGATCGCTAAAGATGATAAGATTGCAGCTTCATACCGGGAGACTACATGGAAGCCCAAGTTTACTATTGAGAAAGAGAAGCAGAAGGAAGAAGAAAAGGACACTGAATCAAGTGGTCTTGCAAGCATACATAAGAAGGTATTTGACCTGTTATACAAGATTGCAGACATTCCCTTCCTGAGTGCCTACAAGTTTAAAATACATGATCTCATTGAAAAGGGTGAAACGCAGCCGAATCTCACAGTTGGAATTCTTGTAGCCGTTGTGGTTATTGTCTTGACAATTTTCCTTCGTATTGTATTTGGTGGGAAGAAAAAGCCAGCAAGAGTGGAGAAAACAAACACACCTGCCGCAGAAACTTCCACTAACCAAGACAGTGGAGAGAATGAAGAAAACAAAGAGGAGGAAACATCGAAGGCTCCACGTCGGAGGGTAAAGCGAGATAATTGA 1623 0.4264 MGERKRIPLGIFAVIFFVICSSSLHLLRASDDADDAIFYESFDEDFDDRWIVSDKDEYNGIWKHSKSEGHEDYGLLVSEKARKYAVVKELDEPVILKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWKPKEFDNDSPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKFPPSVPSDKLSHVYTAILKPDNELQILIDGEQKKKANFLSSEDFEPSLIPPKTIPDPEDKKPEDWDEREKIPDPSAVKPDDWDEDAPLEILDEETVKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKITNPNCETAPGCGEWKRPMKKNPAYKGKWHAPLIKNPAYKGIWKPQDIPNPDYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAKDDKIAASYRETTWKPKFTIEKEKQKEEEKDTESSGLASIHKKVFDLLYKIADIPFLSAYKFKIHDLIEKGETQPNLTVGILVAVVVIVLTIFLRIVFGGKKKPARVEKTNTPAAETSTNQDSGENEENKEEETSKAPRRRVKRDN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3365 540 MobiDBLite consensus disorder prediction 499 540 - -
Mtr8g3365 540 MobiDBLite consensus disorder prediction 517 540 - -
Mtr8g3365 540 PRINTS Calreticulin signature 110 128 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 PRINTS Calreticulin signature 139 155 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 PRINTS Calreticulin signature 237 250 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 PRINTS Calreticulin signature 285 307 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 PRINTS Calreticulin signature 342 361 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 PRINTS Calreticulin signature 374 394 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 SUPERFAMILY P-domain of calnexin/calreticulin 224 363 IPR009033 GO:0005509|GO:0005515
Mtr8g3365 540 Gene3D Calreticulin/calnexin, P domain 223 367 IPR009033 GO:0005509|GO:0005515
Mtr8g3365 540 PANTHER CALRETICULIN AND CALNEXIN 12 196 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 PANTHER CALRETICULIN AND CALNEXIN 197 540 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 Pfam Calreticulin family 38 393 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr8g3365 540 ProSitePatterns Calreticulin family signature 1. 108 123 IPR018124 GO:0005509
Mtr8g3365 540 MobiDBLite consensus disorder prediction 274 304 - -
Mtr8g3365 540 PANTHER - 12 196 - -
Mtr8g3365 540 PANTHER - 197 540 - -
Mtr8g3365 540 MobiDBLite consensus disorder prediction 215 322 - -
Mtr8g3365 540 MobiDBLite consensus disorder prediction 230 260 - -
Mtr8g3365 540 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 260 IPR013320 -
Mtr8g3365 540 Gene3D - 38 403 - -
Mtr8g3365 540 ProSitePatterns Calreticulin family repeated motif signature. 285 297 IPR018124 GO:0005509
Mtr8g3365 540 ProSitePatterns Calreticulin family signature 2. 143 151 IPR018124 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3365 Mtr-Chr8 44173169 44178366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3365 11 540 Miscellaneous Gene Families AT5G61790 73.070 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3365 K08054 - gmx:100785901 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3365 8 44173169 44178366 Mtr8g3365 8 44173169 44178366 ECH