Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3284 ATGGATTCGAGTTCAGGGCAGCAAGAATTCGATTATATGTTCAAATTGTTAATGATTGGGGATTCTGGTGTTGGCAAAAGTAGTCTTCTTCTCAGATTCACCTCTGATGATTTTGATGATCTCTCTCCCACCATTGGTGTTGATTTTAAGGTCAAATATGTCACGATAGAGGGTAAAAAGCTTAAGCTTGCCATTTGGGATACTGCTGGTCAGGAGAGATTTAGAACACTGACAAGTTCTTACTACAGAGGGGCTCAAGGAATCATCATGGTTTATGACGTAACACGGCGAGAAACATTTACAAATCTCTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACAAATCAAGACTGCATGAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCTAGGGAGTATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTAAATGTGCAGCAATGCTTTGAAGAGCTTGTTTTGAAGGTTCTTGATACACCTAGCCTTTTAGCCGAGGGCTCTAAGGGAGTAAAAAAGAACATTTTTAAGGACAAACCTCAGTCTGATGCATCCGCCAGCGGTTGTTGCTGA 627 0.4035 MDSSSGQQEFDYMFKLLMIGDSGVGKSSLLLRFTSDDFDDLSPTIGVDFKVKYVTIEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQDCMKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFKDKPQSDASASGCC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3284 208 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Mtr8g3284 208 Gene3D - 7 208 IPR027417 -
Mtr8g3284 208 PANTHER DRAB5-RELATED 1 208 - -
Mtr8g3284 208 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Mtr8g3284 208 SMART arf_sub_2 1 179 - -
Mtr8g3284 208 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 208 - -
Mtr8g3284 208 SMART ran_sub_2 19 205 - -
Mtr8g3284 208 ProSiteProfiles small GTPase Ras family profile. 6 208 IPR001806 GO:0003924|GO:0005525
Mtr8g3284 208 SMART ras_sub_4 14 178 - -
Mtr8g3284 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Mtr8g3284 208 PRINTS Transforming protein P21 ras signature 14 35 - -
Mtr8g3284 208 PRINTS Transforming protein P21 ras signature 36 52 - -
Mtr8g3284 208 PRINTS Transforming protein P21 ras signature 54 76 - -
Mtr8g3284 208 PRINTS Transforming protein P21 ras signature 118 131 - -
Mtr8g3284 208 PRINTS Transforming protein P21 ras signature 153 175 - -
Mtr8g3284 208 SMART rab_sub_5 14 178 - -
Mtr8g3284 208 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Mtr8g3284 208 ProSiteProfiles small GTPase Rab1 family profile. 9 208 - -
Mtr8g3284 208 CDD Rab18 14 175 - -
Mtr8g3284 208 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3284 Mtr-Chr8 43354022 43357820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3284 15 168 EF-hand Containing Proteins AT5G27540 25.625 1.75e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3284 K07910 - gmx:100526880 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3284 8 43354022 43357820 Mtr3g3360 3 47499829 47506233 PCT