Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3274 ATGAAAGGTGGAACGGTTCAGATTAATTGGCACGAGAGCAAACCCGTTTTAACCCTAGATTTTCATCCTCTCTCCTCCACTCTCGCCACCGCCGGCGCTGATTTCGACATCAAGTTATGGTCAGTTAAACCTTCTGGATCACAAAAGAAGCTTCCAGTAGTTACTTACCTCAGTAGTCTCTCGTATCATAGTTCCGCTGTTAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGTTAGCTTCTGGTTCTGATGGAGGTGAATTGTTAATATGGAAGCTACATTCAACGGATACCGGCCAAACATGGAAGGTTCTTAAGATTTTACGATCTCATGTCAAGGACATTATGGACCTGGAGTGGTCTACTGATGGTGGATATATCATATCCGGATCAGTTGATAATTCTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACCCATGCACACTATGTTCAGGGGGTAGCATGGGACCCTTTAGGGAAGTATATTGCTTCTCTTAGTTCTGACCGGACTTGCCGAATTTACATCAGTAAGCCCCATAAATCAAAGGGTGTTGAGAGAATCAATTACGCTTGCAAGCATGTTATTTCTAAGGCAGAACAGCCATTATTAAAGAATTCCAAGTCGAATAAATATCATCTCTTCCATGATGAAACATTGCCCTCTTTCTTTAGAAGATTAGCTTGGTCTCCAGATGGTTCATTTCTACTTGTGCCTGCAGGTTCTTACAAAATCGGTACAGCGTCTGAATCTGTAAATGCAGCTTACATATTTTCTAGAAAAGATCTTTCTCGGCCTGCCATACAGCTTCCGTGTGCAAGCAAAGCTGTTGTAGCTGTTCGATTCTGTCCTGTATTATTTAAGCTTAAGGGAACAAATTCAGATGGGTTATTTAAGCTCCCATATCGCGTTGTATTTGCCGTGGCCACATTGAATTCATTGTACATTTATGACACTGAGAGCACTTCTCCAATAGCAATATTTGCTGGCCTTCACTATGCTCCAGTAACAGATATTACCTGGTCACCTGATGCCCATTATTTAGCATTCTCCTCGCAAGATGGTTTCTGCTCTATGGTGGAGTTCGAAAATGACGAACTTGGATCACCTTACTGCTTATCAAAAAATGTCTTGGAGGACAGTAAAAGCACCCTTCAGACAGCCAATGATGCTGTACTGCCAACTGGGAGTATTGGTGCAGTTGTAGCAGAAAGCATGAAAATGGAAGTGGAAGAAAAGGTTGATGACATGGACATAGAAGCATCTGCGGATATTGGGGCAGTCACATCAGAAAGCAGCAAAACTGTAATACAAGATAAGGCTGATGACGTGATCATCAAATCAACTGGGAATGTTGACAATAGGAAAAATGAAGCAGAACATAAAGCTGATGATATGGTCATTGAAGAAGTTACGGCAGATATTAGGAAAAATGAAGCAGAGGAGAAGGCTGCTGACATGATCATTGCGACAACTGGGACTGCAAATATTGGAGCAGCTCTATTAGATAATAGAAAAACCGAAGACACAGAAAATAAACTGCTTAGTGGTTTAGGCAGTATTAATTCTGGAGCCGAAGAGAAGGCGTCGAAACAACCAGCTAATCCAGATGGTAAACAAAGTGAAGCAGAAGAGAAGGCAGATAAACCACAATCAACTTCGGGCAGCATAAAATCTGAGGCAGCACAAAAGGTAGGGAATCAATCGTCCAGTTCAAAGAGCACACCCATCTCAAATAAGCCAGCCAGGAAGCGCATTACACCTATTGCAATTGATCCATGA 1800 0.4194 MKGGTVQINWHESKPVLTLDFHPLSSTLATAGADFDIKLWSVKPSGSQKKLPVVTYLSSLSYHSSAVNVIRFSSSGELLASGSDGGELLIWKLHSTDTGQTWKVLKILRSHVKDIMDLEWSTDGGYIISGSVDNSCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYIASLSSDRTCRIYISKPHKSKGVERINYACKHVISKAEQPLLKNSKSNKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIGTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPVLFKLKGTNSDGLFKLPYRVVFAVATLNSLYIYDTESTSPIAIFAGLHYAPVTDITWSPDAHYLAFSSQDGFCSMVEFENDELGSPYCLSKNVLEDSKSTLQTANDAVLPTGSIGAVVAESMKMEVEEKVDDMDIEASADIGAVTSESSKTVIQDKADDVIIKSTGNVDNRKNEAEHKADDMVIEEVTADIRKNEAEEKAADMIIATTGTANIGAALLDNRKTEDTENKLLSGLGSINSGAEEKASKQPANPDGKQSEAEEKADKPQSTSGSIKSEAAQKVGNQSSSSKSTPISNKPARKRITPIAIDP* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3274 599 SUPERFAMILY WD40 repeat-like 11 364 IPR036322 GO:0005515
Mtr8g3274 599 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Mtr8g3274 599 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Mtr8g3274 599 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Mtr8g3274 599 Pfam WD domain, G-beta repeat 57 92 IPR001680 GO:0005515
Mtr8g3274 599 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 599 IPR045145 GO:0006335
Mtr8g3274 599 Gene3D - 187 391 IPR015943 GO:0005515
Mtr8g3274 599 Gene3D - 2 186 IPR015943 GO:0005515
Mtr8g3274 599 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Mtr8g3274 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Mtr8g3274 599 MobiDBLite consensus disorder prediction 558 587 - -
Mtr8g3274 599 MobiDBLite consensus disorder prediction 521 599 - -
Mtr8g3274 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Mtr8g3274 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Mtr8g3274 599 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 599 - -
Mtr8g3274 599 SMART WD40_4 2 41 IPR001680 GO:0005515
Mtr8g3274 599 SMART WD40_4 101 140 IPR001680 GO:0005515
Mtr8g3274 599 SMART WD40_4 143 182 IPR001680 GO:0005515
Mtr8g3274 599 SMART WD40_4 53 92 IPR001680 GO:0005515
Mtr8g3274 599 SMART WD40_4 327 367 IPR001680 GO:0005515
Mtr8g3274 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Mtr8g3274 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Mtr8g3274 599 MobiDBLite consensus disorder prediction 521 543 - -
Mtr8g3274 599 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Mtr8g3274 599 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Mtr8g3274 599 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Mtr8g3274 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3274 25 181 Miscellaneous Gene Families AT5G08390 27.215 5.06e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3274 K10751 - gmx:547606 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3274 8 43218074 43223481 Mtr8g3274 8 43218074 43223481 ECH