Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3084 ATGTATCACAGTGTCGCTGCAAGGCGCCTACTATACCGTTCTACAATATCATACTACGTTAAATCCGGTCTCATCGACACTGCAATCCAACTGTTCGACGAAATGTCCCAATCAAATTGTCGCTTATTCAGCATCGATTACAATCGCTTCATCGGCGTTCTCCTCCGTCACTCTCACCTCAACCTCGCCGAAAATTACTACCACCACCATGTCATCCCCAATGGTTTTTCTCTCACCCCATTCACCTACTCACGTTTCATTACTGCACTCTGCTCCGTCAAGAATTTCTTGCTCATTGAATCCCTCCTCCGCGATATGGACGATCTTGGCATCGTTCCTGATATTTGGGCTTTTAATATCTATCTCAACATTCTCTGCCGTGAAAATCGGTTAGAAACTGCACTTCAATTGTTTCAAACAATGCCTTTGAAGGGAAGAAAGCCTGATGTTGTTAGTTATACTATTATTATTGATGCATTGTGTAAAGTGAAGAGGTTTGATGAGGTCGTGCATGTTTGGCGTAAGTTGATTGATAGTGGTTTGAAGCCTGATTTTAAGGTATGTGCTGCACTTGTTGTTGGTTTGTGTAGTGGTGGCTATGTTGATTTAGCTTACGAGCTTGTTGTTGGTGTCATTAGTGGTGGTGTTGAGGTGAATTGTTTGGTTTATAATGCTTTGATTCATGGGTTTTATAAGATGGGTAAAAAAGATAAGGCGGAAGCGATTAGAGGGTTTATGAGTAAGAATGGGTGTGCACCCGATTTGGTTACTTATAATATTTTGTTGAATTATGGTTGTGATGAAGTTACGGTTGATGAGGCGGAGAGGTTGGTGGAGACTATGGAGAGGAGTGGTATGGCTGATTTGTATAGTTATAATGAGTTGCTTAAGGCGTTTTGTAAGGCGTACCAGGTGGATAGGGCTTATTTATATATGGTTAACAAGATGCAGAGTAAAGGGGTGTGTGATGCTGTTTCTTACAATACTATTATTGTGGCTTTTTGCAAAGTGAGGCGGACTGAGAGAGCTTATGAGTTGTACGAGGAAATGTGTAGGAAAGGGATTCAGCCAGACGTGGTGACGTTCACTGTGCTTATAAAAGCGTTTTTAAGGAAAGGTGGTTCCAATGTTGCTAACAAGCTTCTTGTTGAAATGAAAGCGATGAGGATTGTTCCTGACGTAATATTCTACACCACAGTAGTTGATCATCAGTGCAAGTCCGGGAATATTGATAAGGCTTATGGTGTTTTTTGTGACATGGTGGAGAATGGAGTGAGTCCAGATGTGGTCTCATACAATGCAATCATAAATGGGTTTTGCAAGGCTTCTAGAGTTATGGGAGCTTGGCGTCTATACGAAGAAATGCAGGTTAAAGGATTAGATCCGGACGAGGTCACTTTCAACTTGATAGTTGGAGTGCTCATTCAGGGAAACAAAATTTCAGAGGCATATAGGGTTTGGGATCAGATGATGGAAAAAGGCTTTACACTTAATGGAGATCTTTCTAATATTCTAGTGAATGCTGTTCAGTCAAGAGATGGCACATGA 1548 0.4141 MYHSVAARRLLYRSTISYYVKSGLIDTAIQLFDEMSQSNCRLFSIDYNRFIGVLLRHSHLNLAENYYHHHVIPNGFSLTPFTYSRFITALCSVKNFLLIESLLRDMDDLGIVPDIWAFNIYLNILCRENRLETALQLFQTMPLKGRKPDVVSYTIIIDALCKVKRFDEVVHVWRKLIDSGLKPDFKVCAALVVGLCSGGYVDLAYELVVGVISGGVEVNCLVYNALIHGFYKMGKKDKAEAIRGFMSKNGCAPDLVTYNILLNYGCDEVTVDEAERLVETMERSGMADLYSYNELLKAFCKAYQVDRAYLYMVNKMQSKGVCDAVSYNTIIVAFCKVRRTERAYELYEEMCRKGIQPDVVTFTVLIKAFLRKGGSNVANKLLVEMKAMRIVPDVIFYTTVVDHQCKSGNIDKAYGVFCDMVENGVSPDVVSYNAIINGFCKASRVMGAWRLYEEMQVKGLDPDEVTFNLIVGVLIQGNKISEAYRVWDQMMEKGFTLNGDLSNILVNAVQSRDGT* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3084 515 Pfam Pentatricopeptide repeat domain 214 263 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Mtr8g3084 515 Pfam PPR repeat family 323 370 IPR002885 -
Mtr8g3084 515 Pfam PPR repeat family 427 471 IPR002885 -
Mtr8g3084 515 Pfam PPR repeat family 113 162 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Mtr8g3084 515 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 514 - -
Mtr8g3084 515 Pfam PPR repeat 390 421 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 151 184 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 430 464 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 290 322 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 397 429 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 16 41 IPR002885 -
Mtr8g3084 515 TIGRFAM PPR: pentatricopeptide repeat domain 325 359 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Mtr8g3084 515 Pfam PPR repeat 81 111 IPR002885 -
Mtr8g3084 515 Pfam PPR repeat 12 40 IPR002885 -
Mtr8g3084 515 Gene3D Tetratricopeptide repeat domain 94 212 IPR011990 GO:0005515
Mtr8g3084 515 Gene3D Tetratricopeptide repeat domain 213 310 IPR011990 GO:0005515
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Mtr8g3084 515 Gene3D Tetratricopeptide repeat domain 3 92 IPR011990 GO:0005515
Mtr8g3084 515 Gene3D Tetratricopeptide repeat domain 311 406 IPR011990 GO:0005515
Mtr8g3084 515 Gene3D Tetratricopeptide repeat domain 407 513 IPR011990 GO:0005515
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Mtr8g3084 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Mtr8g3084 515 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 514 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3084 250 509 Glycosyltransferase AT1G05670 29.771 9.78e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3084 - - aprc:113872581 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3084 8 41419427 41422324 Mtr8g3084 8 41419427 41422324 ECH