Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3079 ATGAGTCTGTGGCGGTGCATCATGTTGATATTAATCGGAACAATCATATTAGAATTGAATCCGGTGGTGGCAGTGAAAGGTGTTCCACTAGGAACAAGTTCACGATGGATAGTGAATCAAGATGGAGAAAGAGTGAAACTAGCATGTTTGAATTGGGTGTCTCATTTAGATGCTGTGGTGGCTGAAGGGCTGAGTAAAAAGCCTGTGGATGTTATTTCTAATGGAATAAAGTCCATGGGATTTAACTGTGTTAGGCTCACTTGGCCTATTCTTCTTCTTACTAATGATACTCTTTCTTCTCTTACTGTTAGACAATCATTTCAGAACCTTGGTCTTCTTCAATCTGTAGCTGCTTTTCAATCCAATAATCCTTCTATCATTGATGTTTCCCTTATTCAAGCTTTTCAGGCAGTAGTGAAAAGTCTTGGTGACAATGATGTGATGGTGATTTTGGACAACCACATAACACAGCCAGGATGGTGCTGCAGTAATTCTGATGGCAATGGGTTTTTTGGTGACCAATATTTTGACCCTAATCTGTGGATCCAAGGTCTTACCAAAATGGCTACTCTTTTCAATGGAGTGTCTAATGTGGTTGGCATGAGCTTGAGGAATGAACTTAGAGGTCCAAAACAGAATGTCAATGACTGGTACAGGTATATGGTACAAGGAGCAGAAGCAGTTCATGCAGCAAATCCAGATGTTCTTGTAATTTTATCTGGATTAAATTTTGACAAAGATCTATCCTATATTGCCAAAAGACCAGTGAACCTAACATTCAAAGGGAAACTAGTCTTTGAAGCACACTGGTATGCCTTCACTGATGGTCAAGCTTGGGCATCAGGCAACCCAAATCAAGTATGTGGGCAAGTGGCTGGAAATATGAAGAGAATGTCTGGTTACTTGGTGGACCAAGGATGGCCATTGTTTGTGAGTGAGTTTGGTGTGGATTTGAGGGGTACTAATGTCAATGATAACCGTTATCTTAACTGTTTTATAGCATATGCAGCTGAACTTGATTTGGATTGGGCATTGTGGACATTGGTAGGTAGTTACTACTTTAGACAAGGGGTTATAGGAATGGAAGAGTTTTATGGGATTTTCAATTGGGATTGGACACAAGTTAGAAATGCTAGCTTCTTGCAAAGGATTGCTTCCCTGCAACTTCCATTTCAAGGTCCAGGCATAACAGTAGGCAATCCACACAAACTGCTATTCCATCCTTCAACGGGCCTTTGTGTAATAAGGAAGTCACTACTAGAGCCACTAAAATTGGATCCATGCTCTCTTTCTGATGGTTGGAATTACACTCCACAGAAAATTCTATCAGTAAAAGGTACATACTTTTGCATACAAGCAGTGAAAGAAGGGATGCCTGCAACACTTAGCATACTATGCTCAAATCCTAACTCTAAATGGGACATGATCTCAGACTCCAAGTTGCACCTTTCATCAAAAATTAACAGTGGATCGACAAATGTTTGTCTAGATGTGAATGATAACAACATCATTGTGACCAATGCTTGTAAATGTTTGAGCAATGATCATTCATGTGACCCTGGAAGCCAATGGTTTAAACTTATTGATAGCGGGAGGAGGTCGATATCATCAATCTCGACATTATCCGAACTAAATTTATTGGAACTTTTCATGAAACCATATTTAACCTCAAAATAA 1677 0.3965 MSLWRCIMLILIGTIILELNPVVAVKGVPLGTSSRWIVNQDGERVKLACLNWVSHLDAVVAEGLSKKPVDVISNGIKSMGFNCVRLTWPILLLTNDTLSSLTVRQSFQNLGLLQSVAAFQSNNPSIIDVSLIQAFQAVVKSLGDNDVMVILDNHITQPGWCCSNSDGNGFFGDQYFDPNLWIQGLTKMATLFNGVSNVVGMSLRNELRGPKQNVNDWYRYMVQGAEAVHAANPDVLVILSGLNFDKDLSYIAKRPVNLTFKGKLVFEAHWYAFTDGQAWASGNPNQVCGQVAGNMKRMSGYLVDQGWPLFVSEFGVDLRGTNVNDNRYLNCFIAYAAELDLDWALWTLVGSYYFRQGVIGMEEFYGIFNWDWTQVRNASFLQRIASLQLPFQGPGITVGNPHKLLFHPSTGLCVIRKSLLEPLKLDPCSLSDGWNYTPQKILSVKGTYFCIQAVKEGMPATLSILCSNPNSKWDMISDSKLHLSSKINSGSTNVCLDVNDNNIIVTNACKCLSNDHSCDPGSQWFKLIDSGRRSISSISTLSELNLLELFMKPYLTSK* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3079 558 Gene3D Glycosidases 28 388 - -
Mtr8g3079 558 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 7 544 - -
Mtr8g3079 558 SUPERFAMILY Ricin B-like lectins 400 526 IPR035992 -
Mtr8g3079 558 SUPERFAMILY (Trans)glycosidases 29 378 IPR017853 -
Mtr8g3079 558 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 7 544 - -
Mtr8g3079 558 Pfam Cellulase (glycosyl hydrolase family 5) 72 348 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3079 Mtr-Chr8 41393868 41397707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3079 29 537 Glycoside Hydrolase AT1G13130 60.234 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3079 - - gmx:100790415 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3079 8 41393868 41397707 Mtr8g3079 8 41393868 41397707 ECH