Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3076 ATGAGGTTACGGTGGTTGTTAGACACATGCTCCTCCGCCAACAACTGCGCCACGGCCACCCACAACTCAACCATCTCACTGCATCCATCCAAGAAACAACAACATGCATCAGACTCAAGCACTTCTTCTTCTTCAACCCTAACCTCCGACGACAGCACCTCAACTCTTTATAGCAACTACTCAATACAAACACTTCCATCAGTTCCATCTCTCCAAAAACTCTCTTCTCAAAACCTCAACAACTTCTCCGTCTCCTACCACTGCATCACCTCTCTCACACCCCACTCTTCCCGCCCTATCACATCGCTTGCCCTCCACAACAACCTCCTCTACGCAGCTACGGAAAATCAAATCAACGTCTACGATCGTCAAACGTGCACTTATCTCCATACCTTCAACACCAAATCCATTTCCTCCGGTTCAACTAAAACCATTGCCTTCTCTAAAGACATGGTCTTCACCACTCACCAAGACTGTAAAATCCGCGTCTGGAACCACCACCACCACAAAAACAACAACAACCACCGGAAGTTAACCACTCTTCCCACTGTCAACGACCGTTTCCGCCGTTTCCTCCTCCCAAGTAACTACATCAACATCCGTCGCCACGTAAAACGTCTCTGGATTGAACATGCCGACGCCGTCACCGACCTTGCAGTTTCAAACGGCGTTATCTACTCCGTTTCATGGGACAAAACACTCAAAATATGGAGAATCTCTGATCTTCGTTGCTTAGAATCCCTCAAAGCACACGAAGATGCGGTCAACGCGGTTGCAGTTTCTAACGATGGAACAGTGTACACAGGATCATCCGATAAACGAATCCGCGTTTGGGCGAAACCCGTCGGTGAAAAAAAGCACGTTCTAGTTGCAACTTTGGAGAAGCATAAATCAGCGGTTAATGCTTTAGCCCTAAACGACGACGGTTCGGTGCTATTTTCAGGTGCATGCGATCGTTCAATATTAGTATGGGAACGAGAGGATAGTGCGAATCATATGGTTGTGAGTGGGGCTTTGAGGGGGCATCAGAAAGCGATACTTTGTTTGATCAACGTTTCTGATTTGTTGCTGAGTGGTTCTGCTGATCGGACGGTTAGGATTTGGAAACGGGTTTATGATGGTTCGTTTTGTTGTGTTGGTGTTCTTGATGGTCACCGGAAACCGGTTAAGTCGTTAGCGGCAATTCAAGAGTATAATGATGATGATGAAAGTCAAAGTTCTCCTAACGGTGTCGTTTCTGTTTTTAGTGGTTCATTAGATGGTGAAATAAAGGTTTGGCAACTTTCTATTGGGTGTGATCTGGCCTCTCAGGGTCAATCAATATTTTCTGAATTCCTAGAATAG 1344 0.4613 MRLRWLLDTCSSANNCATATHNSTISLHPSKKQQHASDSSTSSSSTLTSDDSTSTLYSNYSIQTLPSVPSLQKLSSQNLNNFSVSYHCITSLTPHSSRPITSLALHNNLLYAATENQINVYDRQTCTYLHTFNTKSISSGSTKTIAFSKDMVFTTHQDCKIRVWNHHHHKNNNNHRKLTTLPTVNDRFRRFLLPSNYINIRRHVKRLWIEHADAVTDLAVSNGVIYSVSWDKTLKIWRISDLRCLESLKAHEDAVNAVAVSNDGTVYTGSSDKRIRVWAKPVGEKKHVLVATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRVYDGSFCCVGVLDGHRKPVKSLAAIQEYNDDDESQSSPNGVVSVFSGSLDGEIKVWQLSIGCDLASQGQSIFSEFLE* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3076 447 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 431 IPR045182 -
Mtr8g3076 447 SMART WD40_4 332 369 IPR001680 GO:0005515
Mtr8g3076 447 SMART WD40_4 125 165 IPR001680 GO:0005515
Mtr8g3076 447 SMART WD40_4 201 238 IPR001680 GO:0005515
Mtr8g3076 447 SMART WD40_4 241 279 IPR001680 GO:0005515
Mtr8g3076 447 SMART WD40_4 375 427 IPR001680 GO:0005515
Mtr8g3076 447 SMART WD40_4 85 122 IPR001680 GO:0005515
Mtr8g3076 447 SMART WD40_4 286 325 IPR001680 GO:0005515
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 278 IPR001680 GO:0005515
Mtr8g3076 447 Gene3D - 3 187 IPR015943 GO:0005515
Mtr8g3076 447 PRINTS G protein beta WD-40 repeat signature 225 239 IPR020472 -
Mtr8g3076 447 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Mtr8g3076 447 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Mtr8g3076 447 Gene3D - 197 284 IPR015943 GO:0005515
Mtr8g3076 447 CDD WD40 88 427 - -
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 325 - -
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 247 IPR001680 GO:0005515
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 278 - -
Mtr8g3076 447 MobiDBLite consensus disorder prediction 27 51 - -
Mtr8g3076 447 Gene3D - 285 441 IPR015943 GO:0005515
Mtr8g3076 447 PANTHER F21J9.19 19 431 - -
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 369 IPR001680 GO:0005515
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 369 - -
Mtr8g3076 447 Pfam WD domain, G-beta repeat 377 426 IPR001680 GO:0005515
Mtr8g3076 447 Pfam WD domain, G-beta repeat 290 324 IPR001680 GO:0005515
Mtr8g3076 447 Pfam WD domain, G-beta repeat 338 369 IPR001680 GO:0005515
Mtr8g3076 447 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Mtr8g3076 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 334 IPR001680 GO:0005515
Mtr8g3076 447 SUPERFAMILY WD40 repeat-like 85 429 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3076 Mtr-Chr8 41384245 41386091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3076 242 427 Acyl Lipid Metabolism Gene Families AT3G18860 28.646 7.08e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3076 - - gmx:100817776 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3076 8 41384245 41386091 Mtr8g3076 8 41384245 41386091 ECH