Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3069 ATGCATCAACTTGAAGTACTCATCATCTTCCTCCCATTCCTCCTCGGTTTAACCCTAACATTCAACTGCTTCGTCACACTCATTACATGGATCTTCAACTCATGTCTCCGATCCGACACACACCTCATCAAAACCTATGGTTCATGGGCTTTAATCACCGGAGCAACTGACGGCATCGGAAAAGCCCTAGCCTACCAACTAGCACAGAAAAGTCTCAACCTCATTCTTGTAAGTAGAAACTCTAAAAAACTCGAAACAGTTAAAAACGAAATCAAAACAAAGTACCCTCGCATTGACATTAAAACCATCACCATTGATTTTTCCGAAGACTTTACAGAAAGTCTCTGGGAAATAGAAGTTTTGGCTAGTGATTTGAATCTTGGAATATTGATCAACAATGTTGGCATAACATATCCTAAGGCTATGTTTTTTCATGAGGTGAAGGAGGAAATGTGGATGAAGATTGTGAGTGTGAATATTGAAAGTACAACGAGAATAACAAAAGCTGTTTTGGGAGGAATGATGGAAAGGAAAAAGGGTGCAATAGTAAATATTGGGTCTGGTGCTGCGGTGGTTGTGCCTTCACATCCTCTCTTCACAATATATGCTGCAACTAAAGCATATGTAGATCAGTTTTCAAGATCTTTATATATGGAGTACAAACAGTATGGAATCCACGTGCAATGTCAGGTACCACTATATGTTGCAACAAACATGGTATCAAGGGTAGCATCTATTGAAAGAGATTCTTTATTCATACCAACACCTGAAGGTTATGCAAGAGCCTCTATTCGTAAAATTGGGTATGAAACAAGGTGCACACCTTATTGGGCTCACTCAATTCAGTGGGCATTTGCACGCTTAATCCCTGACCCACTTCTTGATTATTGGCGCATGTCCATTGGTTTGCGACGTAGGAGTAGTCACAAGAACAAGGACTAG 942 0.4034 MHQLEVLIIFLPFLLGLTLTFNCFVTLITWIFNSCLRSDTHLIKTYGSWALITGATDGIGKALAYQLAQKSLNLILVSRNSKKLETVKNEIKTKYPRIDIKTITIDFSEDFTESLWEIEVLASDLNLGILINNVGITYPKAMFFHEVKEEMWMKIVSVNIESTTRITKAVLGGMMERKKGAIVNIGSGAAVVVPSHPLFTIYAATKAYVDQFSRSLYMEYKQYGIHVQCQVPLYVATNMVSRVASIERDSLFIPTPEGYARASIRKIGYETRCTPYWAHSIQWAFARLIPDPLLDYWRMSIGLRRRSSHKNKD* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3069 313 PIRSF 11-beta-HSD1 2 312 - -
Mtr8g3069 313 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Mtr8g3069 313 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Mtr8g3069 313 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Mtr8g3069 313 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Mtr8g3069 313 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Mtr8g3069 313 CDD 17beta-HSD1_like_SDR_c 47 290 - -
Mtr8g3069 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 301 IPR036291 -
Mtr8g3069 313 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 9 311 - -
Mtr8g3069 313 Pfam short chain dehydrogenase 49 243 IPR002347 -
Mtr8g3069 313 Gene3D - 41 276 - -
Mtr8g3069 313 PANTHER RH59310P 9 311 - -
Mtr8g3069 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Mtr8g3069 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Mtr8g3069 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3069 Mtr-Chr8 41333283 41336666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3069 10 307 Lipid Metabolism Gene Families AT1G24470 57.047 2.79e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3069 K10251 - jre:108985101 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3069 8 41333283 41336666 Mtr8g3069 8 41333283 41336666 ECH
Mtr8g3069 8 41333283 41336666 Mtr3g2851 3 42452903 42455582 PCT