Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2543 ATGGCTAGAATTCTAAAACCATCCAAGTGGTTCGCTAACAAATTAGGTCTCAAGCTTATTAGATCAAGATCTTCAAATTCATCATCATTATGCTCTCCAAGATCTCCAATTTCACTGTCCACCACACCAAAAACTAACACCAATGAAGATGAAAAAGGATTAAGAGAGGTTTTTAAGTACTTTGATGGTGATGGAGATGGAAAAATTTCAGCCTATGAATTAAGGTCATATTTTGGTTCAATTGGTGAGCACATGTCTCATGAGGAAGCTGAAAGGGTGATAAATTACCTCGACGGCGACGGCGACAACTTGTTGGATTTCAATGATTTTATTAAGTTGATGAAAGGTGAAGGAGGAAGAGATGATGATAAAGATTTAAGAAAGGCTTTTGAGATGTTTGTGTGGGAGGAGAAAGAAGGTTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGAGATGATAGGTCTTATGAAGAGTGTGTGGTTATGATTGATGCATTTGATATTGATCATAATGGGGTTCTTGATTTCAACGAGTTTCATCAAATGATGGCTTAA 567 0.3721 MARILKPSKWFANKLGLKLIRSRSSNSSSLCSPRSPISLSTTPKTNTNEDEKGLREVFKYFDGDGDGKISAYELRSYFGSIGEHMSHEEAERVINYLDGDGDNLLDFNDFIKLMKGEGGRDDDKDLRKAFEMFVWEEKEGCITPKGLQRMLQRLGDDRSYEECVVMIDAFDIDHNGVLDFNEFHQMMA* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2543 188 CDD EFh 54 115 IPR002048 GO:0005509
Mtr8g2543 188 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Mtr8g2543 188 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Mtr8g2543 188 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Mtr8g2543 188 SUPERFAMILY EF-hand 39 187 IPR011992 -
Mtr8g2543 188 Gene3D - 37 118 - -
Mtr8g2543 188 ProSiteProfiles EF-hand calcium-binding domain profile. 158 188 IPR002048 GO:0005509
Mtr8g2543 188 MobiDBLite consensus disorder prediction 25 47 - -
Mtr8g2543 188 PANTHER CALCIUM BINDING PROTEIN 14 188 - -
Mtr8g2543 188 Gene3D - 119 188 - -
Mtr8g2543 188 Pfam EF-hand domain pair 140 187 IPR002048 GO:0005509
Mtr8g2543 188 Pfam EF-hand domain pair 53 115 IPR002048 GO:0005509
Mtr8g2543 188 MobiDBLite consensus disorder prediction 25 50 - -
Mtr8g2543 188 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Mtr8g2543 188 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 14 188 - -
Mtr8g2543 188 SMART efh_1 162 188 IPR002048 GO:0005509
Mtr8g2543 188 SMART efh_1 89 117 IPR002048 GO:0005509
Mtr8g2543 188 SMART efh_1 53 81 IPR002048 GO:0005509
Mtr8g2543 188 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2543 Mtr-Chr8 35838348 35839283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2543 6 188 EF-hand Containing Proteins AT3G50770 52.764 1.36e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2543 K13448 - gmx:100306370 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2543 8 35838348 35839283 Mtr8g2543 8 35838348 35839283 ECH