Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2519 ATGGTGCACACTGCTTATGATTCCTTCGAGCTTCTCACAAACTCAACCTCCAAAATCGAATCCATCGAATCCTACGGTTCCAAACTCCTCTTAGGATGCTCCAACGGATCTCTCCTCGTTTATGCGCCAGAGCATTCAGTACCGGCTCCGGAGGAAATGCGGAAGGAAGCGTATGTGTTAGAGAGAAACGTAAATGGATTCGCAAAGAAGGCTGTGGTGTCATTGCAGGTGGTGGAATCGAGAGAGTTTCTTCTTTCGTTATCGGAATCCATCGCGTTTCATAAACTTCCTACCTTCGAAACTATTGCGGTTATTACTAAAGCGAAAGGTGCAAATGCTTTTTGTTGGGATGAACATAGAGGCTTCTTGTGTTTTGCGAGGCAGAAGCGTGTTTGTATCTTCAGACGCGACGGTGGTAGAGGATTTGTTGAGGTGAAAGACTTTGGTGTTCTTGATGTGGTGAAGTCAATGAGTTGGTGTGGTGAGAATATATGTTTGGGGATTAGAAAAGCGTACGTGATTCTGAATGCTACGAGTGGTTCAATATCTGAAGTTTTTACTTCTGGGAGGCTAGCACCACCTTTGGTGGTATCTCTTCCTTCCGGAGAGCTCCTTTTGGGCAAGGACAACATTGGCGTCATTGTGGATCAAAACGGAAAACTTCGTCCAGAAGGTAGGATTTGTTGGTCAGAGGCCCCAACAGAAGTTGTAATTCAGAATCCATATGCTTTAGCCCTTCTGCCAAGATTTGTGGAGATTCGATCTCTTCGAGGCCCATATCCATTGATACAAACAATTGTTTTTCGAAATGTACGTCATCTTCGCCAGAGCAATAATTCAGTGATTATTGCCTTAGAAAATTCTATTCACTGCCTCTTTCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCTGCTGGTAACTTCGAAGAAGCTTTGTCATTGTGCAAGCTCCTTCCACCTGAAGATTCAAATCTTCGTGCTGCAAAGGAGGATTCAATTCATATAAGGTATGCCCACTATCTTTTTGACAATGGAAGCTATGAGGAGTCAATGGAACATTTCCTAGCATCTCAAGTAGATATAACCTATGTTCTTTCTCTGTATACATCCATTATCCTTCCAAAGACAACTATTGTTCATGATTCAGACAAGTTGGACATTTTTGGGGATCCTTTGCATCTTTCCAGAGGTTCGTCTATGTCTGATGATATGGAGCCCTCTTCAGCATCTAATATGTCAGAATTGGATGACAATGCAGAACTTGAATCGAAAAAAATGAGCCATAATATGCTAATGGCTCTCATCAAATTTTTGCACAAGAAGAGACATAGTATTATTGAGAAGGCCACTGCAGAAGGAACCGAGGAAGTAGTTTTTGATGCAGTTGGTAATAACTTTGAATCCTATAACAGTAATAGGTTTAAGAAAATAAACAAGAGGCATGGGAGTATACCTGTTAGCTCAGAAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCAATGCTTCTAACTGGACAACCTTCTATGGCTGAAAATTTATTGAGAGTTCTTAACTACTGTGATCTGAAAATATGTGAAGAGATACTTCAAGAAGGAAGTTATCATGTTTCTTTAGTAGAACTTTACAAGTGCAACTCCATGCACCGTGAAGCCCTTGAAATTATTAATAAATCGGTGAAAGAGTCAGAGTCTAGCCAGTCCAAGATTGCTCATAGATTCAAGCCAGAGGCCATCATCGAGTACCTCAAGCCACTTTGCGAACTAGACACAACACTTGTTCTAGAGTACTCCATGCTTGTTCTTGAAAGCTGCCCAACCCAAACTATTGAGCTCTTTTTGTCTGGAAATATTCCAGCAGATATGGTGAACTTATATTTGAAGCAACATGCTCCAAATTTGCAAGCCACATACTTGGAGCTCGTGCTTTCAATGAATGAGGGTGCCGTATCTGGAACTTTGCAAAATGAAATGGTACATCTCTATCTTTCTGAAGTACTTGATTGGCACGCTGATTTAAGTTCTGAACAGAAATGGGACGAGAAAGTTTACTCCCCTAAAAGGAAAAAATTACTGTCTGCCTTAGAGAGTATATCAGGATATAATCCAGAAGCTCTTTTGAAACTTCTTCCATCAGATGCTTTATACGAAGAGCGGGCCATATTGTTGGGAAAAATGAACCAACATGAACTAGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCTTATTGTGATCATGTGTATGAATCTGCCCATAAGTCTTCTGTAAAATCTCTCAGCAATATATACCTAATGCTTCTGCAAATCTATCTGAATCCACGGAGGACGACCAAGAACTACGAAAAGAAAATTTCAAATCTATTATCTCCTCGGAATAAATCCATTCGAAAAGTAACTTCAAAATCATTATCAAGAACTATGAGCCGAGGATCAAAGAAAATTGCTGCAATAGAGATTGCAGAGGATGCAAAAGCTAGTCAGAGTAGCGACAGTGGTAGGAGTGATGCTGACACAGAAGAATTTACTGAGGAAGAATGTACTTCTATCATGCTTGATGAAGCCCTCGATTTGTTAAGCCGCAGGTGGGATAGAATCAATGGAGCCCAGGCCCTTAAACTCCTACCAAAAGAGACCAAACTACAGAACTTGCTTCCAATTCTTGGGCCCCTTGTGAGAAAATCTAGTGAAATGTATCGTAATTGTTCAGTTGTCAGAAGCTTGAGACAGAGCGAGAACCTTCAGGTGAAAGACGAACTATACAATAAGAGGAAAGCAGTTATAAAGATTAGCGATGATAACATGTGTTCCTTGTGCCATAAGAAAATAGGGACTAGTGTTTTTGCAGTTTATCCGAATGGGAAAACTCTAGTGCATTTTGTGTGCTTCAGAGATTCTCAAAGTATGAAAGCTGTGGCCAAAGTGTCTCCACTGAAAAAGGCATTTTGA 2979 0.4082 MVHTAYDSFELLTNSTSKIESIESYGSKLLLGCSNGSLLVYAPEHSVPAPEEMRKEAYVLERNVNGFAKKAVVSLQVVESREFLLSLSESIAFHKLPTFETIAVITKAKGANAFCWDEHRGFLCFARQKRVCIFRRDGGRGFVEVKDFGVLDVVKSMSWCGENICLGIRKAYVILNATSGSISEVFTSGRLAPPLVVSLPSGELLLGKDNIGVIVDQNGKLRPEGRICWSEAPTEVVIQNPYALALLPRFVEIRSLRGPYPLIQTIVFRNVRHLRQSNNSVIIALENSIHCLFPVPLGAQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEDSIHIRYAHYLFDNGSYEESMEHFLASQVDITYVLSLYTSIILPKTTIVHDSDKLDIFGDPLHLSRGSSMSDDMEPSSASNMSELDDNAELESKKMSHNMLMALIKFLHKKRHSIIEKATAEGTEEVVFDAVGNNFESYNSNRFKKINKRHGSIPVSSEAREMASILDTALLQAMLLTGQPSMAENLLRVLNYCDLKICEEILQEGSYHVSLVELYKCNSMHREALEIINKSVKESESSQSKIAHRFKPEAIIEYLKPLCELDTTLVLEYSMLVLESCPTQTIELFLSGNIPADMVNLYLKQHAPNLQATYLELVLSMNEGAVSGTLQNEMVHLYLSEVLDWHADLSSEQKWDEKVYSPKRKKLLSALESISGYNPEALLKLLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDHVYESAHKSSVKSLSNIYLMLLQIYLNPRRTTKNYEKKISNLLSPRNKSIRKVTSKSLSRTMSRGSKKIAAIEIAEDAKASQSSDSGRSDADTEEFTEEECTSIMLDEALDLLSRRWDRINGAQALKLLPKETKLQNLLPILGPLVRKSSEMYRNCSVVRSLRQSENLQVKDELYNKRKAVIKISDDNMCSLCHKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKVSPLKKAF* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2519 992 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 602 789 IPR000547 GO:0006886|GO:0016192
Mtr8g2519 992 Pfam CNH domain 26 274 IPR001180 -
Mtr8g2519 992 ProSiteProfiles Citron homology (CNH) domain profile. 16 281 IPR001180 -
Mtr8g2519 992 Pfam Vacuolar sorting protein 39 domain 2 866 974 IPR019453 -
Mtr8g2519 992 Pfam Region in Clathrin and VPS 627 758 IPR000547 GO:0006886|GO:0016192
Mtr8g2519 992 Pfam Vacuolar sorting protein 39 domain 1 499 607 IPR019452 -
Mtr8g2519 992 PANTHER VACUOLAR SORTING PROTEIN 39 1 990 - -
Mtr8g2519 992 MobiDBLite consensus disorder prediction 832 855 - -
Mtr8g2519 992 PANTHER CNH DOMAIN CONTAINING 1 990 IPR032914 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2519 Mtr-Chr8 35512576 35520178 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2519 K20183 - gmx:100805342 1483.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2519 8 35512576 35520178 Mtr8g2519 8 35512576 35520178 ECH