Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2388 ATGATGCAAGAGATGTGGAATGCTCCTCCAGGTTTCAGACCCTCCAAATCAGCACCTTCTTCACCTGCAAAACCTCTTGGTGTTCCCAGAACTCGTTCTGAATCATTTCACATCACTCATAAGGTTCCTATTGGTGATACTCCTTATGTTAGAGCCAAAAATGTTCAGTTGGTGGATAAGGATCCGGAGAGAGCAATTCCGTTGTTTTGGGCGGCGATAAACGCGGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGAAGAAGCTATTGAAGCTATTAAATCACTTAGAAGTAGATGCTCAGATCAAGCACAAGAATCCCTTGATAATATTCTCTTGGATCTATACAAGAGATGTGGTAGGCTTGATGACCAAATTGCTCTATTGAGGCACAAGCTGTATTTAATCCAACAAGGGTTGGCTTTCAATGGCAAGCGCACAAAGACTGCTAGATCTCAAGGGAAGAAGTTTCAAGTCTCAGTGGAACAGGAAGCCACTAGATTATTGGGAAACTTGGGATGGGCACTGATGCAACAAAACAATTACATAGAAGCAGAAGAAGCCTATCGCCGTGCGCTTTGTCTAGCTCCAGACAACAACAAGATGTGCAATTTAGGCATTTGTTTGATGAAACAAGGAAGAATAGCTGAAGCAAAAGAAACTCTCCATAGAGTCAAACCTGCAGTTACAGATGGACCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAGTCCGAAATGATGAACAGAGGAGGAGTAGACAGGCTTGAACAAAGTAGACTCTTTGAAGCTTTTCTTGGTTCTTCATCAATCTGGCAACCTCAGCCTTGTAAGGATAACATTCACACAAGCTTGCCGCCAATGAGAACAACATCAACAACAATTCAAGATGAATTTGGTGATGAGAACATCAATTCCAATACCAACATAGTGAAAAATTACACAGCACAGCCACAAAACAAGTTTACTCCTTTGGTGAACAACTCACTTAATGTTGCAGCTCCGCCATTTTATGCAGCGAAATCATCTTTCAAGGAATCAAATGAGAATTTGAATTTGTCGGAGAGACTTAAGAGAACAAGGTCTGGAAATGCTGCAGGATTACTGAGAGTGGATGATGTGAACAGCAACAAGGTGAATGTGGAATTAGGTGTGCCTGGGAACAAAGCAAGAAGGCTTTCATTTGAGAAGAATAAGTTGTGTGATTTGTTGCCTGATACTAAGGACTTTGAAGATGCTATTCTTGCTGCTGTTTTGGGGTCTTCAAATGAGTTGGAGAATGAAAATGCTGCTACTTCTGGGATTTGCTCCAAGAAAATTGACAAGAGGAGGCTCAAGGTTTTTCAAGATATTACATTATCTTTGAGTCCAAAGGCTTAA 1440 0.4125 MMQEMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHITHKVPIGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLKDLESEMMNRGGVDRLEQSRLFEAFLGSSSIWQPQPCKDNIHTSLPPMRTTSTTIQDEFGDENINSNTNIVKNYTAQPQNKFTPLVNNSLNVAAPPFYAAKSSFKESNENLNLSERLKRTRSGNAAGLLRVDDVNSNKVNVELGVPGNKARRLSFEKNKLCDLLPDTKDFEDAILAAVLGSSNELENENAATSGICSKKIDKRRLKVFQDITLSLSPKA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2388 479 Coils Coil 246 266 - -
Mtr8g2388 479 SUPERFAMILY TPR-like 59 234 IPR011990 GO:0005515
Mtr8g2388 479 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 476 - -
Mtr8g2388 479 Pfam Tetratricopeptide repeat 186 244 - -
Mtr8g2388 479 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 476 IPR044961 -
Mtr8g2388 479 SMART tpr_5 176 209 IPR019734 GO:0005515
Mtr8g2388 479 MobiDBLite consensus disorder prediction 1 32 - -
Mtr8g2388 479 Gene3D Tetratricopeptide repeat domain 49 271 IPR011990 GO:0005515
Mtr8g2388 479 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Mtr8g2388 479 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2388 Mtr-Chr8 34284368 34286961 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2388 - - gmx:100788369 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2388 8 34284368 34286961 Mtr8g2388 8 34284368 34286961 ECH