Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2313 ATGGATCCGTATCGTTATCCTCCGTCGCTCGATTCCCCCTTTTCCCGATCCTATGCCGATCGTGGAACCATCTACGGCGCTCCCAGGGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGAACAGGCAGCTATCAACATTATGGATATGCCGGTGGTGGCTTCCAGCCCCCTCCTCCTTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTTAACTGCACAGACATAGACATTTTGAAGTTCTTTGCTGGTCTGACCATTGTCGATGTGTTGCTGGTCAACAAGAGTGGACGGTTCTCTGGAGAGGCCTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAAAGAGATCGACAGAACATGGGTCGCAGATATGTGGAAGTTTTCAGGTGTAAGAAGCAGGATTATTACAATGCTGTTGCTGGTGAGATCAATTACGAAGGAATATATGACAACGATTACCAAGGAAGCCCTCCTCCCTCCAGGTCCAAGAGATTCAGTGACAAAGAACAAATGGATTACACTGAGATATTGAAGATGCGTGGACTTCCTTTCTTGGTGACTAAATCTCAAATTATTGACTTTTTTAAAGATTACAAGCTGATAGAAGGTAGGGTACACATTGCATGTCGCCCAGATGGTAAAGCTACTGGAGAGGCATATGTAGAGTTTGTTTCGCCAGATGAGGCAAAGAGAGCAATGTTCAAGGATAAAATGACCATTGGTTCAAGGTATGTGGAACTGTTCCCTTCTACACCAGATGAAGCTAGACGGGCCGAGTCAAGATCAAGGCAATAA 873 0.4696 MDPYRYPPSLDSPFSRSYADRGTIYGAPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSYQHYGYAGGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDNDYQGSPPPSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSRQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2313 290 Gene3D - 84 167 IPR012677 -
Mtr8g2313 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 149 IPR000504 GO:0003723
Mtr8g2313 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Mtr8g2313 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 278 IPR000504 GO:0003723
Mtr8g2313 290 SUPERFAMILY RNA-binding domain, RBD 75 163 IPR035979 GO:0003676
Mtr8g2313 290 CDD RRM_hnRNPH_ESRPs_RBM12_like 202 274 - -
Mtr8g2313 290 Gene3D - 184 290 IPR012677 -
Mtr8g2313 290 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 29 290 - -
Mtr8g2313 290 SMART rrm1_1 202 274 IPR000504 GO:0003723
Mtr8g2313 290 SMART rrm1_1 85 154 IPR000504 GO:0003723
Mtr8g2313 290 CDD RRM_hnRNPH_ESRPs_RBM12_like 85 154 - -
Mtr8g2313 290 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 29 290 - -
Mtr8g2313 290 SUPERFAMILY RNA-binding domain, RBD 199 287 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2313 Mtr-Chr8 33595881 33598137 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2313 K12898 - gmx:100816391 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2313 8 33595881 33598137 Mtr8g2313 8 33595881 33598137 ECH