Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2270 ATGGAGCAACTGAAAACAATCGGTCGCGAACTGGCCATGGGATCACAAGGCGCGTTCGGTCAATCAAAGGAGTTTCTCGACCTAATCAAATCAATCGGTGAATCTCGATCCAAAGCCGAAGAAGACCGAATCGTAATCCGCGAAATCGAAACCCTAAAACGCCGAATCTCTGAACCAGATATCCCTAAACGCAAGATGAAAGAGTATATCATTCGTCTTCTCTACGTTGAAATGCTCGGTCACGACGCTTCTTTCGGTTACATTCACGCCGTTAAGATGACTCACGATGATAATCTTCCCTCAAAACGCACCGGTTATCTCGCCGTTACTCTTTTCCTCAACGACGATCATGATCTCATTATCTTAATCGTTAATACGATTCAAAAGGATCTTAAATCTGATAATTATCTTGTCGTTTGTGCTGCACTTAATGCCGTTTGTAGATTAATCAACGAAGAAACTATACCTGCCGTTTTGCCGTTAGTTGTTGAGCTTCTTTCGCATGGGAAAGAAGCGGTTAGAAAGAAAGCAGTTATGGCGCTTCATAGCTTTCATAGGAAATCGTCTTCGTCGGTTTCGCATCTTGTGGCGAATTTTAGGAAGAGATTGTGTGATAATGATCCTGGTGTTATGGGTGCTACTCTTTGTCCGTTGTTTGATCTTATAACCGATGATCCAAATCCGTATAAGGATCTTGTTGTTAGTTTTGTTAGCATTCTTAAACAGGTAGCTGAACATAGGTTGCCTAAGAGCTATGATTATCACCAGATGCCGGCTCCATTCGTTCAGATTAAGTTGCTGAAAATTCTTGCATTGTTGGGGAGTGGCGACAAGAGTTCTAGCGAACACATGTACACTGTTATTGGCGATATAATTAGGAAGGGTGATTCATCAAGTAACATAGGGAATGCTATTCTTTATGAGTCCATTCGCTGTGTCTCTTCCATATATCCCAATCCCAAGTTGTTAGAAGCTGCTGCGGATGTGATTGCCAAGTTTTTGAAGAGTGATAGTCATAATCTGAAATACATGGGTATTGATGCTCTCGGTCGATTGATCAAGTTAAGTCCGCTTATTGCAGAACAACATCAACTTGCCGTCATTGACTGCTTAGAGGATCCTGATGATACTTTGAAGCGAAAAACTTTTGAACTGCTATACAAAATGACCAAGTCTTCCAATGTGGAAGTGATCGTTGACCGTATGATTGAGTACATGATCAGCATTAGTGACGATCATTATAAAACCTATATAGCTTCTCGATGTGTGGAACTTGCTGAGCAATTTGCACCGAGTAATCATTGGTTTATACAGACCATGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTGAATATTAAGGTTGCACATAATTTAATGCGGTTGATTGCAGAAGGATTTGGAGAGGACGATGATGCGGCATATAGTCAGCTGAGATCGTCTGCTGTTGAGTCATATTTGCGCATTATTGGAGAGCCAAAGCTTCCATCGGTGTTTCTTCAGGTTATTTGTTGGGTTCTTGGGGAATATGGCACAGCTGATGGAAAGCATTCCGCTTCCTATATCACTGGGAAGTTATGCGATATGGCAGAGGCATATTCTAATGATGAAATTGTTAAGGCATATGCAATAACAGCGCTGACAAAAATTTACGCGTTTGAAATAGCAGCTGGGAGGAAAGTGGATATGCTATCTGAGTGTCAATCTTTGGTTGAAGAATTATTAGCTTCCCACTCCACTGATTTGCAGCAACGCGCATATGAATTGCAAGCTGTTATTGGTTTGGATGCACGGGCTGTTGAAGCAATATTGCCACATGATGCCAGTTGTGAAGACATTGAGGTGGATAAGAATCTGTCTTTCCTCAATGATTATATCCAGCAGGCTATAGAAAGTGGGGCTATGCCCTACATTTCAGAGAACGAGCGCTCTGGAGCGGTAAGTGTGAGCAACTTCAGAAGCCAAGATCAGCAAGAACCTGGACAGCATGGTCTGAGATTTGAGGCGTATGAAGTTCCAAAGGCTCCTGTGCCATCAAAAGTTACTCCAGTTTCACTATCATCCACGACTGACCTTGTTCCAGTATCGGACTCATTGTATGCTAGGGAGACTCACCAGATCACGTCAGTGGGATTATCATCAGATACAGGATCATCAGGGCTTAAGCTAAGGCTTGATGGTGTTCAGAAGAAGTGGGGTAAGCCAGCTTATTCATCTCCAGCATCATCATCCTCAAATTCTACTGCCCAAAATCCAGTTAATGGCATGACAAAGGTGGATGTTGCAGCTAGTGTAAATTCAAAAGTACGTGATAGCTACGATTCAAGAAAGCAACAGAATGAAATTGATCCAGAAAAGCAGAAGCTTGCCGCTTCATTGTTTGGCGGTTCTACTAAACCTGAGAGAAGAACATCAACTAGCAGCAAGGTTCCAAAAGCTAATGCTGGTGCTGCAGACAGATCTCAGGATTCAAAAGCTGCAATTGTACCCAATAAAGCATCTGGGGATAACTCTAATCAACAACCTCCTCCACAAGATTTGCTTGACTTGGGTGAACCAAATGTTACTGTTGCACCTCCCACCGTGGACCCATTCATGCAACTAGAAGGACTTCTTGACCCAAGCATTAGTTCTACAGTAAGTCATAGTGACAGCGCTGTTACAAATGCACCTGATATTATGGGACTCTATAGTGGGGCTACTTCTGGTGAACAAAGTGGTGGCGGCTATATCCCTGCAGGTGGAGATCTTTTATCCGGGTTGTCAAATGCAGCAGCTGTCAGAGGCACCACGGGAGAAACAATTCCATCGCCCGTATCACAATCTGTTAAGGGTGCTAATGCTAAAGATTCTTTGGAGAAGGATGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGCCAGAATCCCAACTTGTTCAGAGACTTGCTTGGCTAA 2937 0.4304 MEQLKTIGRELAMGSQGAFGQSKEFLDLIKSIGESRSKAEEDRIVIREIETLKRRISEPDIPKRKMKEYIIRLLYVEMLGHDASFGYIHAVKMTHDDNLPSKRTGYLAVTLFLNDDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCRLINEETIPAVLPLVVELLSHGKEAVRKKAVMALHSFHRKSSSSVSHLVANFRKRLCDNDPGVMGATLCPLFDLITDDPNPYKDLVVSFVSILKQVAEHRLPKSYDYHQMPAPFVQIKLLKILALLGSGDKSSSEHMYTVIGDIIRKGDSSSNIGNAILYESIRCVSSIYPNPKLLEAAADVIAKFLKSDSHNLKYMGIDALGRLIKLSPLIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIEYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDAAYSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKHSASYITGKLCDMAEAYSNDEIVKAYAITALTKIYAFEIAAGRKVDMLSECQSLVEELLASHSTDLQQRAYELQAVIGLDARAVEAILPHDASCEDIEVDKNLSFLNDYIQQAIESGAMPYISENERSGAVSVSNFRSQDQQEPGQHGLRFEAYEVPKAPVPSKVTPVSLSSTTDLVPVSDSLYARETHQITSVGLSSDTGSSGLKLRLDGVQKKWGKPAYSSPASSSSNSTAQNPVNGMTKVDVAASVNSKVRDSYDSRKQQNEIDPEKQKLAASLFGGSTKPERRTSTSSKVPKANAGAADRSQDSKAAIVPNKASGDNSNQQPPPQDLLDLGEPNVTVAPPTVDPFMQLEGLLDPSISSTVSHSDSAVTNAPDIMGLYSGATSGEQSGGGYIPAGGDLLSGLSNAAAVRGTTGETIPSPVSQSVKGANAKDSLEKDAKVRQMGVTPTGQNPNLFRDLLG* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2270 978 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 14 974 - -
Mtr8g2270 978 MobiDBLite consensus disorder prediction 827 845 - -
Mtr8g2270 978 MobiDBLite consensus disorder prediction 932 947 - -
Mtr8g2270 978 Pfam Adaptin N terminal region 54 593 IPR002553 GO:0006886|GO:0016192|GO:0030117
Mtr8g2270 978 MobiDBLite consensus disorder prediction 932 954 - -
Mtr8g2270 978 SUPERFAMILY ARM repeat 22 593 IPR016024 -
Mtr8g2270 978 PIRSF AP4_epsilon 936 978 IPR017109 GO:0015031|GO:0030124
Mtr8g2270 978 PIRSF AP4_epsilon 11 675 IPR017109 GO:0015031|GO:0030124
Mtr8g2270 978 PIRSF AP4_epsilon 696 842 IPR017109 GO:0015031|GO:0030124
Mtr8g2270 978 MobiDBLite consensus disorder prediction 770 784 - -
Mtr8g2270 978 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 14 974 - -
Mtr8g2270 978 MobiDBLite consensus disorder prediction 736 761 - -
Mtr8g2270 978 MobiDBLite consensus disorder prediction 732 853 - -
Mtr8g2270 978 Gene3D - 11 606 IPR011989 -
Mtr8g2270 978 MobiDBLite consensus disorder prediction 798 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2270 Mtr-Chr8 32965726 32977754 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2270 K12400 - gmx:100806914 1570.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2270 8 32965726 32977754 Mtr8g2270 8 32965726 32977754 ECH