Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2266 ATGGAACCAGTTTCAAAAAACCCTAGAACAACAAAATCTTCAAGATACTCGTCAAAATCCAAAAACCCTAACAAAAATTCAACCCCAAATTCCAAACCCAATGAATTCCCATCTCATCTTGACACCCCAAACGTATCATCAACAGCTAGAACCCTTTGCAATCTTCTCACCCGAACATCACCTCAGGATATCGATAATGCGTTATCGTCATCCGGGATTCATCCTTCTGAAGAATGTGTCCATGAGGTTTTGAAACTTTCTTATAACTATCCGTCGTCGGCCATCAAGTTCTTTAGGTGGGCTGGGCGTTTGAGAAAACACTCAGCACACGCCTGGAACTTGATGGTTGATTTGCTGGGCCGGAACCAGCTTTTTGAACCTATGTGGGATGCTGTTAGGACTATGAAACAGGAAGGTGTGCTGTCATTGCCCACCTTTGTTTCGGTTTTTCAAAGTTATTGTATGGCCGGTAGGGTTAATGAGGCTGTTATGAGTTTTGATGTGATGGATAAGTATGATATTGACAAGAATGTTGTCGCGGTTAATTCTTTGCTTAGCGCGATTTGTAGAGAAGAGAATCAAACTTCGGTAGGTGTGGAGTTTTTGGAGAAAAAGGTTACGGGAAAGGATGAAGGGAAGATTGAGTTGGATGGGGATAGTTATGCCATATTGCTTGAAGGGTGGGAGAAGGAAGGGAATGCTACTAAAGCTAAAACTACTTTTGGCGAGATGGTGATCCGTGTTGGTTGGAGTCAAGATAATGTAGCAGCTTACGACGCGTTTTTGATGACGTTACTTCGGGCTTTGCAGTTTGATGAGGTCGTGGGGTTTCTTAAAGTTATGAAGGACCACGACTGCTTTCCAGGTTTGAAATTCTTTACCAATGCTCTTGATGTGCTTGTTAAGCGTAACGATGCTGCCCATGCCATCCCTTTGTGGGATGTCATGGTTGTTAGTGGATTATTGCCTAACTTGATCATGTATAATGCCATGATTGGGTTGCTTTGCAACAATGACGAGATTGATCATGCGTTTCGCCTGCTCGATGAGATGGTTCTACATGGCGCTTTTCCCGATTCTTTGACTTATAACATGATTTTTGAGTGCTTAGTGAAGAACAAAAAAGTTCGTGAAACGGAGAGGTTTTTTGCTGAGATGATCAAGAATGAGTGGTTGCCCACAACTTCTAATTGTGCTGTAGCCATTGAAATGTTGTTTAATTGTGATGACCCTGATGCAGCACTTGAGATTTGGAGTTACATGGTTGAAACTCGTGTTAGGGTGCTTGATGTGAGTGCGAACATGGTGCTTATTGGTCTTTGCAAATTGAAAAGACTGTCAGAGGTTAGAAGGTTTGCTGAAGAAATGCTTGATAAAAGGATCTCCATATATGATTCTACAATGAACAAGTTGAAGGAAGCATTCTACAAAGAGAGTAGAAGTTCAAGTGCAAGAGACAAATTTGATGCTATTTACAGGAGATGGAAAGCGCATGTCAAGTTGTAA 1506 0.4177 MEPVSKNPRTTKSSRYSSKSKNPNKNSTPNSKPNEFPSHLDTPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKLSYNYPSSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQSYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLEKKVTGKDEGKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMTLLRALQFDEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVSGLLPNLIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERFFAEMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCKLKRLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWKAHVKL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2266 501 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 23 498 - -
Mtr8g2266 501 Pfam PPR repeat 431 460 IPR002885 -
Mtr8g2266 501 Pfam PPR repeat 145 172 IPR002885 -
Mtr8g2266 501 Gene3D Tetratricopeptide repeat domain 78 202 IPR011990 GO:0005515
Mtr8g2266 501 Gene3D Tetratricopeptide repeat domain 203 307 IPR011990 GO:0005515
Mtr8g2266 501 Pfam PPR repeat family 323 372 IPR002885 -
Mtr8g2266 501 TIGRFAM PPR: pentatricopeptide repeat domain 362 394 IPR002885 -
Mtr8g2266 501 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Mtr8g2266 501 PANTHER OSJNBA0019D11.15 PROTEIN 23 498 - -
Mtr8g2266 501 MobiDBLite consensus disorder prediction 1 44 - -
Mtr8g2266 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Mtr8g2266 501 Gene3D Tetratricopeptide repeat domain 309 500 IPR011990 GO:0005515
Mtr8g2266 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2266 Mtr-Chr8 32917239 32919040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2266 254 500 Glycosyltransferase AT1G05670 21.862 2.79e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2266 - - gmx:100796114 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2266 8 32917239 32919040 Mtr8g2266 8 32917239 32919040 ECH