Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2260 ATGCACTTTCCAATGGATTTCGCAAAACACATTACTACTAAACCCCCCATTCTCTTCACACGCCTCCTAACCTGGATCACCTCAACCCTCCCCCGCTACCGTCACATTCCACCACCACAACCACCACCACCGCCGCCACAACCTCCTTCTCCTCCACCAACCACCCTCCCTTCAATCCTCGCACACAAAGTTCTAGATTCTTCCAAATGCAAAACCCTAATACCTAACCTAACCCCACACGAATTCGAACACTCATTCTTCACTCATCACACCACCGTTAACCTCAAAACCACACTCGATTTCTTCAGTTTCGCTTCAAAGAATTTCAAATTCCGTTTCACCGTTCGTTCTTATTGCATCTTAATTCGTTTGCTTCTAGCTTCGAATCATATACCGCGTGCTAAGTTTACGTTGAAACGGTTAATAGAAGGTAATGCTAATACGCCTTTGAAGAAAACCGACGCTAGGTTAAGCGAAATTGCTTCGGCATTTTTGGAATTGGGTGAGCGAAGTCATGGTGAATTGGATTTGTTGATTTATATTTTGTGTTCACAGTTTCAGCATTTAGGGTTTCATTGGGCTTTTGATACTTTCATGTTGTTTACTAGTAAGGGTGTTTTTCCTTCGTTGAAAAGTTGTAATTTTTTGATGAGTTCGTTGGTGAAGAGTAATGAGCTTCATAAGAGTTTTAGGGTTTTTGACGCGATGTGCCGCGGTGGTGTTTTGATTGATGTTTATACTTATGCGACTGCTATTAACGCGTATTGTAAAGGTGGGAAGATTGATGAGGCTGTTGGGTTGTTTTTGAAAATGGGGGAGGGAGGTGTTTTGCCGAATGTGGTTACTTACAATAACTTGATTGATGGGTTATGTAAGAGTGGAAGGTTAGAAGAAGCTTTAATGTTTAAGGGCAGGATGGTTGAGAATAAAGTGAACCCTAGTTTGGTAACTTATGGGATTCTTGTGAATGGTTTGGTGAAGTTTGAGAAATTTGATGAGGCGAATTCGGTTTTGGTTGAAATGTATAGCAAGGGGTTTTCTCCTAATGAGTTTGTTTTTAATGCACTTATTGATGGTTATAGCAGAAAAGGGAATATGGATGATGCATTGAGGGTTAGAGATGATATGACGTTGAAGGGATTGAAACCGAATGCTGTTACTCATAATACTCTTTTACAGGGTTTTTGTAGGACCAATCAAATGGAGCAAGCTGAACAAGTTTTAGAGTACTTGTTATCGAACGTTTTGTCTGTTAATGAGGACGCATGTTCTTATGTGCTTCACTTGTTATGCAAGAGTTCCAAGTTTGATTCAGCCTTGAAAATTGTTAAGGCGTTGTTGTTGAGGAACATTAAGGTTAATGATAGCTTGCTAACTTTGTTGGTTTGTGGACTTTGTAAATGTGGAAAACATTTGGAGGCAATTGACCTTTGGTTTAGACTAGCAGATAAGAAAGGGCTTGCAGCGAATACAACAACCTCAAATGCACTGCTCTATGGACTTTGTGAAAGGGGGAACATGGAAGAGGTTTTTCCGGTATGTAAAGAAATGGTGGAGAGAGGTTTGGTGCTTGATGGTATTTCATACAACACACTTATTTTTGGCTGTTGTAAATCAGGTAAAATCGAGGAAGCTTTCAAGCTTAAGGAAAAGATGATGAAGCAAGGATTCAAACCTGATACTTATACCTACAACTTCCTAATGAAAGGGTTAGCTGATAAGGGAAAAATGGATGATGTTGGTAGGGTTTTGCATGAAGCCAAAGATCATGGCGTGGTTCCAAATATCTACACATATGCATTAATGTTGGAAGGATATTGTAATGCTGATAGGATTGATAATGCTGTGAGCTTGTTCAATAAGTTAGTTTATAACAAAGTAGAACTTAGTTATGTTGTTTATAACATACTTATTGCAGCCCATAGTAAAGCTGGGAATTTTACGGAAGCCTTCAAACTCCGCGATGCCATGCGAAGTAGCAACATTCATCCTACGATTTTCACATATTCTTCTATAATACATGGTATGTGCTGTAATGACCTTGTTGAGGAAGCAAAGGGAATTTTTGAAGAAATGAGAAATGAAGGATTGATGCCAAATGTGTTTTGTTATACTGCTCTAATTGGCGGTTACTGCAAGTTAGGTCAGATGGATCAGATAGAGAGTATCTTACAGGAAATGACATCAAACTGTATACAGCCTAATAAAATTACCTACACTATTATGATTGATGGTTATTGCAAAATGGGAAATACGAAAGAAGCGACTAAGCTCTTAAATGAGATGATAGCAAATGGAATATCACCAGATACTGTTACTTATACTGTATTGCAAAAAGGATATTGCAAGGAAAATGAGCTTGAAGAAACTCTTCAAGGCGATACAGCAGTACCTTTAGAAGAAATAACATACACCACATTGGTTGACAAGTTGCATCCACATTCAGATGCAGCACTTAGTAATCGTGAATAA 2472 0.3888 MHFPMDFAKHITTKPPILFTRLLTWITSTLPRYRHIPPPQPPPPPPQPPSPPPTTLPSILAHKVLDSSKCKTLIPNLTPHEFEHSFFTHHTTVNLKTTLDFFSFASKNFKFRFTVRSYCILIRLLLASNHIPRAKFTLKRLIEGNANTPLKKTDARLSEIASAFLELGERSHGELDLLIYILCSQFQHLGFHWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEETLQGDTAVPLEEITYTTLVDKLHPHSDAALSNRE* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 386 419 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 632 665 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 527 561 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 316 350 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 702 735 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 562 596 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 737 771 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 597 622 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 495 525 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 212 244 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 667 701 IPR002885 -
Mtr8g2260 823 TIGRFAM PPR: pentatricopeptide repeat domain 246 280 IPR002885 -
Mtr8g2260 823 Gene3D Tetratricopeptide repeat domain 84 298 IPR011990 GO:0005515
Mtr8g2260 823 Gene3D Tetratricopeptide repeat domain 299 429 IPR011990 GO:0005515
Mtr8g2260 823 Gene3D Tetratricopeptide repeat domain 660 729 IPR011990 GO:0005515
Mtr8g2260 823 Gene3D Tetratricopeptide repeat domain 589 659 IPR011990 GO:0005515
Mtr8g2260 823 Gene3D Tetratricopeptide repeat domain 730 793 IPR011990 GO:0005515
Mtr8g2260 823 Gene3D Tetratricopeptide repeat domain 430 588 IPR011990 GO:0005515
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Mtr8g2260 823 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 39 792 - -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Mtr8g2260 823 MobiDBLite consensus disorder prediction 34 56 - -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Mtr8g2260 823 SUPERFAMILY HCP-like 439 657 - -
Mtr8g2260 823 MobiDBLite consensus disorder prediction 34 57 - -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat family 348 397 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat family 737 783 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat family 278 327 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat family 210 257 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat family 632 677 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat family 527 572 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat 591 621 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat 696 727 IPR002885 -
Mtr8g2260 823 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 39 792 - -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Mtr8g2260 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat 459 481 IPR002885 -
Mtr8g2260 823 Pfam PPR repeat 493 522 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2260 540 821 Glycosyltransferase AT1G05670 29.861 3.21e-35 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2260 - - gmx:100819570 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2260 8 32831463 32837611 Mtr8g2260 8 32831463 32837611 ECH