Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2096 ATGGCTCTCTCTAGTTGCCTCCTTAAACCAAACCACTCTCTTCTTCAATGCCACAAATTCATAGCTCCAAATCCAAACCATGGTTACAGAAACCAGTTCTGTGTGATGGCTTCATCAAACAGTGATGAGGAGAGGACTGTTATAAGGAAAGAAAAAGATGAATGGAAGATCAATTTCTCTGCTGAAAAACCACCAACACCATTGTTGGATACAGTTAATTTTCCAGTTCATATGAAGAACCTGACCACAGAGGATCTGGAACAATTGGCTGCTGAATTGAGGGCTGACATTGTACACAGTGTGTCAGACACTGGTGGGCATCTTAGCTCAAGCTTGGGAGTGGTGGAGTTATCAGTTGCTCTTCATCATGTTTTCGACACTCCGGATGACAAGATCATATGGGATGTTGGCCATCAGGCATATCCCCACAAGATTCTCACAGGTAGAAGGTCAAGGATGCATACCATTAGGAAGACATCAGGACTAGCAGGTTTTCCCAAAAGGGATGAGAGTGTTCATGATGCTTTTGGAGTCGGCCACAGTTCCACAAGTATATCAGCTGGTCTTGGTATGGCAATTGCAAGGGATCTGTTAGGAAAGAAGAACAGTGTGATTTCAGTGATTGGAGATGGTGCCATGACTGCCGGCCAAGCTTATGAGGCCTTGAACAATGCAGGATTCCTCGATTCTAACTTGATAGTTATTCTGAATGACAACAAGCAAGTTTCTTTGCCAACTGCGACACTTGATGGCCCTGCAACACCAGTTGGAGCCCTAAGTAGTACTTTAAGCAAAATTCAAGCAAGCAGAAAATTTCGCAAACTTAGAGAAGCCACGAAAAACATCACAAAGCAAATAGGAGGACAAACACACCTAGTTGCATCAAAAGTTGATAAGTATGCAAGAGATTTCATTAGTGGTTCTGGTTCTTCACTCTTTGAGGAGCTTGGTATGTACTACATTGGTCCTATGGATGGTCATAACATTGAAGATTTAGTCAACATATTTGAGAAAGTGAAAGCAACGCCAGCTTCAGGTCCAGTTTTGATTCATATTGTTACGGAGAAAGGAAAGGGATACCCTCCAGCTGTAGCAGCAGCTGATAGAATGCATGGTGTTGTCAAGTTTGATCCGAAAACAGGCCACCAGTTCAAGCCAAAACCCTCTACACTGGCATACACACAGTACTTTGCTGATTCATTGATAAAGGAAGCTGAAATGGACAATAAGATAGTGGCAATTCATGCAGCAATGGGTGGTGGAACTGGCCTAAATTACTTCCAGAAAAGGTTTCCAGACCGATGTTTCGATGTCGGCATAGCTGAACAACATGCTGTTACATTTGCAGCAGGGTTAGCCACTGAAGGTCTCAAGCCATTTTGTGCTATTTATTCAACATTCCTACAACGTGGATATGATCAGGTAGTCCATGATGTTGATCTTCAAAAACTACCTGTTCGATTTGCGATGGATAGAGCTGGTTTAGTTGGTGCAGATGGGCCAACCCATTGTGGAGCATTTGATATCACCTTCATGGCTTGCTTGCCCAACATGATTGTCATGGCTCCATCTGATGAAGCTGAACTGATGAACATGGTTGCAACTGCAGCAGCTATAGATGATAGACCAAGTTGCTTTAGATTTCCAAGAGGAAATGGAATTGGAGCTGATCTTCCTCTCCATAACAAAGGAACCCCGCTTGAGATTGGAAAAGGCAGAATTCTGCTTGAAGGAAGCAGAGTTGCGATTTTGGGATATGGCTGTATGGTTCAGCAATGCATGAAAGCAGCAGAAATGCTTAGAGCAGTAGGGGTTTATGTGACAGTTTCTGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTCATTAGGCTACTGGCTAGAGAGCATGAAATACTGATCACAGTGGAGGAGGGTTCCATTGGAGGTTTTGGATCACATGTTTCTCAATTCTTAAGCTTAGCTGGTCTCCTTGATGGACCACTTAAGTTGAGATCAATGATGCTTCCTGATAGGTACATTGACCATGGAGCACCCAATGATCAGATTGATGAAGCAGGTCTTTCATCAAAACATATTCTAGCTACAGTCCTCTCTCTTTTGGAAATGCCAAAAGAAGCTCTTTTTTTTTAA 2133 0.4285 MALSSCLLKPNHSLLQCHKFIAPNPNHGYRNQFCVMASSNSDEERTVIRKEKDEWKINFSAEKPPTPLLDTVNFPVHMKNLTTEDLEQLAAELRADIVHSVSDTGGHLSSSLGVVELSVALHHVFDTPDDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAIARDLLGKKNSVISVIGDGAMTAGQAYEALNNAGFLDSNLIVILNDNKQVSLPTATLDGPATPVGALSSTLSKIQASRKFRKLREATKNITKQIGGQTHLVASKVDKYARDFISGSGSSLFEELGMYYIGPMDGHNIEDLVNIFEKVKATPASGPVLIHIVTEKGKGYPPAVAAADRMHGVVKFDPKTGHQFKPKPSTLAYTQYFADSLIKEAEMDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMACLPNMIVMAPSDEAELMNMVATAAAIDDRPSCFRFPRGNGIGADLPLHNKGTPLEIGKGRILLEGSRVAILGYGCMVQQCMKAAEMLRAVGVYVTVSDARFCKPLDTDLIRLLAREHEILITVEEGSIGGFGSHVSQFLSLAGLLDGPLKLRSMMLPDRYIDHGAPNDQIDEAGLSSKHILATVLSLLEMPKEALFF* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2096 710 CDD TPP_PYR_DXS_TK_like 397 550 - -
Mtr8g2096 710 Gene3D - 570 703 IPR009014 GO:0003824
Mtr8g2096 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 453 IPR029061 -
Mtr8g2096 710 SMART Transket_pyr_3 391 556 IPR005475 -
Mtr8g2096 710 Pfam Transketolase, pyrimidine binding domain 390 552 IPR005475 -
Mtr8g2096 710 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 72 700 IPR005477 GO:0008661|GO:0016114
Mtr8g2096 710 ProSitePatterns Transketolase signature 2. 497 513 IPR020826 -
Mtr8g2096 710 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 709 - -
Mtr8g2096 710 Gene3D - 391 558 - -
Mtr8g2096 710 ProSitePatterns Transketolase signature 1. 94 113 IPR005474 -
Mtr8g2096 710 CDD TPP_DXS 105 360 IPR005477 GO:0008661|GO:0016114
Mtr8g2096 710 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 354 IPR005477 GO:0008661|GO:0016114
Mtr8g2096 710 SUPERFAMILY TK C-terminal domain-like 565 702 IPR009014 GO:0003824
Mtr8g2096 710 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 709 IPR005477 GO:0008661|GO:0016114
Mtr8g2096 710 Gene3D - 61 363 - -
Mtr8g2096 710 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Mtr8g2096 710 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 702 IPR005477 GO:0008661|GO:0016114
Mtr8g2096 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 579 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2096 Mtr-Chr8 30949608 30954448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2096 433 649 Acyl Lipid Metabolism Gene Families AT1G55510 23.176 8.82e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2096 K01662 - gmx:100798930 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2096 8 30949608 30954448 Mtr8g2096 8 30949608 30954448 ECH