Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2062 ATGGGACCAATTTCAGATTTCCCATTAATGTTCATTCCACCAGCTATGCCTTCTTCACCTTCTTCTCCTGAACTCGTTCACTCCGAACCTAATCCCAATCCCATTCCCGAACCTGAGCCTAATCCCGAATCTAATACCTCTCACAATGCTCCATCTTCTCCTCCACAAACCACCACAAACAAACCACCACCAACCGCCGCAGAAATCGCGGCGCGATATATTCTACAATCCCCGCCGTTATCTTTTGCGCCAAAACCACTGTCTACGTCGGAAGTTACGGCGGCGTTCGGCGTTATCGACGATCTTCCATCGTTAACCGATGAAGAACAGAAGCCACTGAGTTCGATCTTAACTACTTCCTCCGGTGATCAGTTTTCTGGAACCTCTTGGTGGAGTAATCAGTTGGAAACTGGTATCTCTGCTCTTGCTGATCTTGCTGATCTTGCTAATCCTTCTGATGATGATTTTGGTTATCAAGGTTACTCGATTCACACAAATCTTGCTTCGTATAATAGCCGTAAACCTTTCGAAATCGATAATGGCGGTTGGTCTCCCGTTGACTACGGTTATAATTTCAACAATTTCTTTGCCACCGCGTCGTCGCCTAGGTCGCCTTCGTTGAAATCGGTGGGAGCTGGAATTACGAATATGGGAAACACATGTTTTATGAGTGCAATTCTTCAGTGTTTTACACATACAGTGCAAATGTTTCTTGGTCTTCGTTATTGCACTCATGCATCTTCATGTGATGTGGAAGGTTTCTGTGTTATTTGTGCTTTCCGGGATCACCTTGACGATGCTTTGGAACGTTCTAGATCTCCAATTGTTCCAAGAGAGCTTGTTAAAAATTTGAACTATTTTTCAGCTGGTTTTGTAATAGGTAACCAGGAGGATGCACATGAGTTTATGCAATATGCTTTGAATAAACTGAAAAGAGGCTTCCCAGTTGGAGAAGAAAATCTAATTGATCAAATATTTGGGGGTCGTCTTGTTAGCAAACTTCGATGTTGCTGCTGTGGTCACTCTTCTGATAAATTTGAGCCATTGATCGACATGAGTTTAGAGATAGAACATGTGAGTACCATTCAGCAGGCTCTGGAATCTTTCACCAAGGTAGAAAAGATGGATGGAAAGTTTATTTGTAGTGACTGCAACCAAGAAGTAACTATGGAAAAACAGCTTATGCTTGATAAAGCTCCTTCAGTTGCAGCATTTCATTTGAAAAGGTTTCTAAAAGATGGAGACTCAGTTAAAAAAATTGATAAATATGTCGATTTCTCTAAGGAACTGGACCTGAAGCCTTATACATGTGGTAGTAGCAGTGGTGACAATGTACTTTTGAAGTATGAGCTATATGCTGTTGTCGAGCATAGGGGACCTTCACCTAATTCAGGGCACTATTTTAGCTTTGTGCGTTCTGCTCCAGACAAATGGTATTTGATGGATGATGATAAGGTTTCTAGTGTTTCTGAAGAAGAAGTCCTGAATCGTAAGGCATACATTCTGTTTTATGCCCAACAAGGTACACCCTGGTTCTCTAGTATTGTGGAAAATGAAGAGACAGCTCCAAAATCAAAATATTTACACAACAAATATGGTTTTGATTGTGATAATAATGGAGAAAAGGATGATAATGACTCAACCGATGCAAATTATGATAACTGTGTGAGTGACATGGATGAAGAATGTGATTCCGGAATGCAAGACGTTTCACCTTGA 1719 0.4124 MGPISDFPLMFIPPAMPSSPSSPELVHSEPNPNPIPEPEPNPESNTSHNAPSSPPQTTTNKPPPTAAEIAARYILQSPPLSFAPKPLSTSEVTAAFGVIDDLPSLTDEEQKPLSSILTTSSGDQFSGTSWWSNQLETGISALADLADLANPSDDDFGYQGYSIHTNLASYNSRKPFEIDNGGWSPVDYGYNFNNFFATASSPRSPSLKSVGAGITNMGNTCFMSAILQCFTHTVQMFLGLRYCTHASSCDVEGFCVICAFRDHLDDALERSRSPIVPRELVKNLNYFSAGFVIGNQEDAHEFMQYALNKLKRGFPVGEENLIDQIFGGRLVSKLRCCCCGHSSDKFEPLIDMSLEIEHVSTIQQALESFTKVEKMDGKFICSDCNQEVTMEKQLMLDKAPSVAAFHLKRFLKDGDSVKKIDKYVDFSKELDLKPYTCGSSSGDNVLLKYELYAVVEHRGPSPNSGHYFSFVRSAPDKWYLMDDDKVSSVSEEEVLNRKAYILFYAQQGTPWFSSIVENEETAPKSKYLHNKYGFDCDNNGEKDDNDSTDANYDNCVSDMDEECDSGMQDVSP* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2062 572 SUPERFAMILY Cysteine proteinases 211 506 IPR038765 -
Mtr8g2062 572 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 204 529 - -
Mtr8g2062 572 MobiDBLite consensus disorder prediction 27 41 - -
Mtr8g2062 572 Pfam Ubiquitin carboxyl-terminal hydrolase 213 504 IPR001394 GO:0004843|GO:0016579
Mtr8g2062 572 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 212 507 IPR028889 -
Mtr8g2062 572 Gene3D Cysteine proteinases 208 508 - -
Mtr8g2062 572 MobiDBLite consensus disorder prediction 1 64 - -
Mtr8g2062 572 PANTHER UBIQUITINYL HYDROLASE 1 204 529 - -
Mtr8g2062 572 MobiDBLite consensus disorder prediction 538 572 - -
Mtr8g2062 572 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 449 467 IPR018200 GO:0004843|GO:0006511
Mtr8g2062 572 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 213 228 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2062 Mtr-Chr8 30512700 30516370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2062 213 506 Miscellaneous Gene Families AT2G24640 33.441 3.00e-50 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2062 K11855 - vvi:104882327 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2062 8 30512700 30516370 Mtr8g2062 8 30512700 30516370 ECH