Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2008 ATGAGTATCTTAACCAAACAATTACAAACTAAATGTTGCCGAAAACTCAAAAACACCATCATCGTCAGAGCCATAACAACATCTACACAAATGCTGCAAAGTGACTATGTTTACATTAACAATCGCCAAATCGATGCTTTTATAAAATCAAATAACCCAAACTCAGCACTTGATCTTTTCCACAACATGCAAATCCGTGACACTGTCACCTACAATTTACTCATTTCATCCTCTTGCTTGCCACCCAAGAAAGCTTTTCAACTTTATTCCGAAATGGGGTTGTATAGAATAAGAGAAACCGCGACTACGTTTGCTTCTGTTGTAGCTCTTTGTACAAATAATGGGTTTTGTAGAGAAGGTTCTCAGGTTCATTCTAGGGTTGTAAAGTTTGGATTTTTGAATAATGTGTTTGTTGGTGGTGCACTTGTTGGGTTCTATATGAATCTTGGGCTAAGTGGGGTTGCACTGAAGTTGTTTGATGAGTTGTCAGAGAGAAATTTGGGTGTGTGGAATGTGATGTTTCGTGGGTTTTGTGAAATGGGTTGTGTGGAAGTTGAAGAGTTGCTTGGATTTTACGCTAGGATGTGTTTTGAAGGTGTAGAAGCAAATGGGGTTACTTTTTGTTATTTGCTTAGGGGGTGTAGTAGTAAGAGAAGGTTTCATGAAGGGGAGATGATTCATAGCTGTGTTTTGAAGATGGGTTTTGTGGAATATAATGTTTTTGTTGCTAATGCTTTGGTGGATTTTTACTCTTCATGCGGGTGTTTCGTTAGTGCAAGGAAGTGTTTTGAAGGGATAAAGGTTGAGGATGTTATTTCGTGGAATTCTATGGTTTCTGTTTATGCTGACAATAATTTGGTAAATGATGCTTTGGAGTTTTTTAATTTTATGCAAATGTGGGGTCATAGGCCATCAGTTCGTTCGTTCATCGGTTTCTTGAATTTGTGCAGTAGAAATAAAGAGATTGGTTTGGGGAAGCAGATTCATTGTTGTGTTATGAAATTTGGTTTTGATGAAAGGAGTGTGTATGTTCAATCTGCTTTGATAGACATGTATGGAAAATGTTTGGACATTCAGAGTTCTGTGAATGTATTTGAATGGCTTCCTAAGATGACATTGGAATGTTGTAACTCATTGATGACATCTTTGTCTCATTGCGGTTGTGTTGAAGATGTGGTGGAATTGTTTGGTTTAATGGTTGATGAAGGTCTTATGCCAGATGAAGTAACCGTCTCGACGACACTGAAGGCGTTATCGGTGTCTGCTTCAGCAAGTTTTACTAGCTCTCAGTCACTGCATTGTTTTGCATTGAAATCTGGTGTTGAAGGAGACACCACGGTTCTGTGTTCTCTTATGGATGCATATTCAAGATGTGGACATTGGGAACTTTCTCATCGGATATTCGAGACCATTCCAACACCAAATGCTATTTGCTTCACTTCAATGATCAATGGTTACGCTCGAAATGGGATGGGGAAAGAAGGACTTCTGTTGCTTCATGCTATGATTGAGAAAGGCGTAAAACCGGACGAAGTTACCTTCTTATGCGCATTAACAGGGTGCAGTCACACTGGACTGATCCAACAAGGGAGAATACTCTTTAACTCGATGAAATCTCTTCATGGTGTCCACCCAGATCGGCGACATATTTCATGCATGGTGGATCTTTTATGCCGTGCAGGACTTCTACATGAAGCCGAAGAGTTTCTTCTAAAGGCTCAAGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTCCAAAGTTGCAGGGTTTACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAATGTTAGTTGATCTACACCCAAATGACCCTGCAGTGTGGTTGCAAACTTCAAATTTTTACGCTGAGGTAGGAAAATTTGACGAATCAAGACAACTAAGAGACGTCGCTCTAGCAAGGAAGATGTCTAGGGAGATTGGTTGTAGTTTAATTGAGATAAGAAAGTGA 1974 0.3967 MSILTKQLQTKCCRKLKNTIIVRAITTSTQMLQSDYVYINNRQIDAFIKSNNPNSALDLFHNMQIRDTVTYNLLISSSCLPPKKAFQLYSEMGLYRIRETATTFASVVALCTNNGFCREGSQVHSRVVKFGFLNNVFVGGALVGFYMNLGLSGVALKLFDELSERNLGVWNVMFRGFCEMGCVEVEELLGFYARMCFEGVEANGVTFCYLLRGCSSKRRFHEGEMIHSCVLKMGFVEYNVFVANALVDFYSSCGCFVSARKCFEGIKVEDVISWNSMVSVYADNNLVNDALEFFNFMQMWGHRPSVRSFIGFLNLCSRNKEIGLGKQIHCCVMKFGFDERSVYVQSALIDMYGKCLDIQSSVNVFEWLPKMTLECCNSLMTSLSHCGCVEDVVELFGLMVDEGLMPDEVTVSTTLKALSVSASASFTSSQSLHCFALKSGVEGDTTVLCSLMDAYSRCGHWELSHRIFETIPTPNAICFTSMINGYARNGMGKEGLLLLHAMIEKGVKPDEVTFLCALTGCSHTGLIQQGRILFNSMKSLHGVHPDRRHISCMVDLLCRAGLLHEAEEFLLKAQGKGDCFMWSSLLQSCRVYKNEEVGTRAAQMLVDLHPNDPAVWLQTSNFYAEVGKFDESRQLRDVALARKMSREIGCSLIEIRK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2008 657 Gene3D Tetratricopeptide repeat domain 224 332 IPR011990 GO:0005515
Mtr8g2008 657 Gene3D Tetratricopeptide repeat domain 333 423 IPR011990 GO:0005515
Mtr8g2008 657 Gene3D Tetratricopeptide repeat domain 424 497 IPR011990 GO:0005515
Mtr8g2008 657 Gene3D Tetratricopeptide repeat domain 39 196 IPR011990 GO:0005515
Mtr8g2008 657 Gene3D Tetratricopeptide repeat domain 498 654 IPR011990 GO:0005515
Mtr8g2008 657 SUPERFAMILY TPR-like 521 642 IPR011990 GO:0005515
Mtr8g2008 657 Pfam PPR repeat family 474 522 IPR002885 -
Mtr8g2008 657 Pfam PPR repeat family 270 315 IPR002885 -
Mtr8g2008 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Mtr8g2008 657 TIGRFAM PPR: pentatricopeptide repeat domain 477 511 IPR002885 -
Mtr8g2008 657 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Mtr8g2008 657 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Mtr8g2008 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Mtr8g2008 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Mtr8g2008 657 PANTHER OS01G0913400 PROTEIN-RELATED 9 651 - -
Mtr8g2008 657 Pfam PPR repeat 449 469 IPR002885 -
Mtr8g2008 657 Pfam PPR repeat 375 404 IPR002885 -
Mtr8g2008 657 Pfam PPR repeat 551 577 IPR002885 -
Mtr8g2008 657 PANTHER - 9 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2008 Mtr-Chr8 29894242 29896674 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2008 41 655 Glycoside Hydrolase AT3G49170 30.635 7.34e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2008 - - lja:Lj0g3v0314629.1 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2008 8 29894242 29896674 Mtr8g2008 8 29894242 29896674 ECH