Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2007 ATGGACAAATTCTTCTTGGTTTCTTTACTCGGTTTGCTTATAGTGGCGAATGGAGTTTCAGGAAGCATGATGTGCGACAACAACTTTGGCATGCTAGAAGAACTCAACAACCTCGACACAGAGGAAGATTATGAGGTAGAAGAACTTTCTGACATACCTTCATGGACAAGTGAACGCGGCGGAAAAGTTCTTGTGAATATTGATAGCTTTGGTGCTGCAGGAAATGGAGAAACTGATGATACTGAGGCTCTTCAAAAAGCATGGGGAGTTGCTTGTTCTACACCAAAATCTGTTCTATTGATTCCAAAAGGACGCCGTTACCTTGTTAATGCGACGAAATTCATAGGGCCTTGTAAAGACAATCTAATCATCCAGATTGATGGAACACTGGTTGCTCCGGAAGATCCAAAGAACTGGGATCCAAAACTTCCACGCGTTTGGCTCGATTTTTCTAAATTGAAGAAAGCTGTTTTCCAAGGCTCTGGAGTTATCGACGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGACTAATCCTTGCAAAGGTGCACCAACGGCACTAACTATCGATACAAGTTCATCTATAAAGGTTAAAGGACTAACTATCCAGAATAGCCAACAGATGCATTTTACGATATCGCGATGCGATTCTGTTCGAATTTTAGGAGTTAAAGTGGCGTCACCAGGAGACAGTCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATTGTCCAAGACTGCAAAATTGGAACAGGGGATGATTGCATTTCAATTGTGAATGCTAGTTCTAATATCAAAATGAAGAGAATTTTTTGTGGACCGGGACATGGAATCAGCATTGGAAGTCTTGGTAAAGATAACTCAACTGGTGTAGTCACGAAAGTGATTTTGGATACAGCATTTCTAAAGGGGACTACCAATGGTCTTAGAATTAAGACTTGGCAGGGAGGTGCAGGATATGTCAAAGGGGTACGCTTTCAGAATGTGAGGGTGGAAAATGTATCAAACCCCATTCTTATAGATCAATTTTACTGTGATTCTCCAACCTCATGTCAAAACCAGTCATCAGCATTGGAGATAAGTGAGATAATGTACCAAAATGTAAGTGGGACTACAAATAGTGCTAAGGCCATTAAATTTGACTGCAGTGACACTGTTCCATGCAGCAATTTAGTCCTTAGCAATGTTGATTTGGAGAAACAAGATGGCACAGTTGAAACATATTGTCATTCAGCTCAAGGATTTGGATATGGTGTGGTTCATCCTTCAGCTGAATGCCTTAATTCCAGTGATAAAACTTCTCAAGATGATGAATCTCAATCTATTATTTCTGAAGATGATTATACCCGTCACACCGAACTATAG 1386 0.404 MDKFFLVSLLGLLIVANGVSGSMMCDNNFGMLEELNNLDTEEDYEVEELSDIPSWTSERGGKVLVNIDSFGAAGNGETDDTEALQKAWGVACSTPKSVLLIPKGRRYLVNATKFIGPCKDNLIIQIDGTLVAPEDPKNWDPKLPRVWLDFSKLKKAVFQGSGVIDGSGSKWWAASCKKNKTNPCKGAPTALTIDTSSSIKVKGLTIQNSQQMHFTISRCDSVRILGVKVASPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGVVTKVILDTAFLKGTTNGLRIKTWQGGAGYVKGVRFQNVRVENVSNPILIDQFYCDSPTSCQNQSSALEISEIMYQNVSGTTNSAKAIKFDCSDTVPCSNLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSAECLNSSDKTSQDDESQSIISEDDYTRHTEL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2007 461 PANTHER - 2 445 - -
Mtr8g2007 461 ProSitePatterns Polygalacturonase active site. 276 289 IPR000743 GO:0004650|GO:0005975
Mtr8g2007 461 SUPERFAMILY Pectin lyase-like 63 434 IPR011050 -
Mtr8g2007 461 Pfam Glycosyl hydrolases family 28 96 416 IPR000743 GO:0004650|GO:0005975
Mtr8g2007 461 MobiDBLite consensus disorder prediction 435 461 - -
Mtr8g2007 461 SMART pbh1 219 245 IPR006626 -
Mtr8g2007 461 SMART pbh1 269 289 IPR006626 -
Mtr8g2007 461 SMART pbh1 328 349 IPR006626 -
Mtr8g2007 461 SMART pbh1 246 267 IPR006626 -
Mtr8g2007 461 PANTHER BNAA08G20470D PROTEIN 2 445 - -
Mtr8g2007 461 Gene3D - 54 460 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2007 Mtr-Chr8 29890682 29894100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2007 24 461 Glycoside Hydrolase AT1G23460 68.793 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2007 - - mtr:MTR_8g065030 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2007 8 29890682 29894100 Mtr8g2007 8 29890682 29894100 ECH