Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2005 ATGGCAGATAACAAAGACATTGAAACAGTGATCAGAAGAGTCACCTCTGTAACCAACCACCTTGTTTCCTCATCACCACCTCAACTTATTTCCTTGTGTCACACTTCAACTTACCAACGTGTTCATGGTGATGTTCCTTCTCACGACGTAGTTTGGAAGGTTGTTCCTTCTGATGATGATGAAGGAAAGGTTTTCACTGACATTCTCTATGAGAAATCCGTTGGTGAAGGAATTGCCAAGATTAGCATTAATAGGCCGGAGAGGAGGAATGCTTTTCGACCTCATACGGTTAAGGAGCTTATTCGTGCTTTCAATGATGCTAGAGATGATCCCTCTGTTGGTGTCATCATTCTCACGGGAAAGGGAACAGATGCATTCTGTAGTGGTGGTGACCAAGCCTTGAGGACTCCAGATGGTTATTCCGATCATGAAAATATCGGTCGCCTTAATGTGTTAGACTTGCAGGTGCAGATTCGCCGCCTTCCAAAACCAGTAATTGCAATGGTTGCAGGGTATGCTGTTGGAGGAGGGCATATATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACCGGTCCTAAGGTTGGGAGCTTCGATGCTGGTTATGGAAGTTCTATCATGTCACGTTTGGTAGGTCCTAAAAAAGCACGCGAAATGTGGTTTCTCACAAGGTTCTATACGGCTGTTGAAGCAGAGAAAATGGGCCTTATCAATACTGTTGTACCACTAGAGAATTTAGAAAAAGAAACAATCAAATGGTGTAGGGAGATACTCAGAAATAGCCCAACCGCAATTCGGGTTCTCAAGGCAGCTATTAATGCAGTGGATGACGGGCACGCTGGACTTCAGGAAATGGGTGGAAATTCAACATTGATATTTTATGGCACTGAAGAAGCAAATGAAGGAAAAACTGCATATATGGAGCGTCGACGTCCAGATTTTTCTAAGTTTAATAGAAGACCATAA 987 0.4316 MADNKDIETVIRRVTSVTNHLVSSSPPQLISLCHTSTYQRVHGDVPSHDVVWKVVPSDDDEGKVFTDILYEKSVGEGIAKISINRPERRNAFRPHTVKELIRAFNDARDDPSVGVIILTGKGTDAFCSGGDQALRTPDGYSDHENIGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQEMGGNSTLIFYGTEEANEGKTAYMERRRPDFSKFNRRP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2005 328 CDD crotonase-like 68 264 - -
Mtr8g2005 328 TIGRFAM menB: naphthoate synthase 65 324 IPR010198 GO:0008935|GO:0009234
Mtr8g2005 328 Hamap 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 52 327 IPR010198 GO:0008935|GO:0009234
Mtr8g2005 328 Gene3D - 57 265 - -
Mtr8g2005 328 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 9 328 IPR010198 GO:0008935|GO:0009234
Mtr8g2005 328 Gene3D - 266 316 IPR014748 -
Mtr8g2005 328 Pfam Enoyl-CoA hydratase/isomerase 76 322 IPR001753 GO:0003824
Mtr8g2005 328 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 166 186 IPR018376 GO:0003824
Mtr8g2005 328 SUPERFAMILY ClpP/crotonase 66 323 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2005 Mtr-Chr8 29871242 29874039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2005 1 328 Acyl Lipid Metabolism Gene Families AT1G60550 76.558 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2005 K01661 - gmx:100807101 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2005 8 29871242 29874039 Mtr8g2005 8 29871242 29874039 ECH