Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1965 ATGATGAATTGGATGAGTATGGCGACGAGCGCATTAGCAAACTCCTCCTCCACAACATTTCTTCTTCACAAAACCATTATCCCCTTTTCTCTCACTAAAACCTCGCCGTTTCTTATTTCTTTTACCACCCCCTCTCGTCGCTTCCTTTCTGCTTCATCTCTTCCTTCTCTCTCCCCTGACATCGACTTCAACTTCTCTCATTATGGAGATGGAAATAGTGTTGCAGTTTCCAGGAGAGGTTCAAAAGTGCTTCTTAAAGGGATGACTTACTCTGAACTTGAAAAATGGGTTCAATCACATGGATACAGGCCAGGCCAGGCCATGATGTTATGGAAACGTATGTATGGAAACAACATTTGGGCGCATCATACTGACGAATTGGAAGGTTTGAAGAAAGATTTCAAGCAGATGTTGAGTGAACATGCAGATTTCAAGGCACTTGCTGTGAAAGAAATTCATGCAGCGTCTGATGGAACTAGGAAGATTTTATTCACATTGGATGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGATACAGGCAGGACTACCGTGTGTGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACAGGAAGAATGGGTCTCAAGAGACATCTTACTGCCGCAGAAATAGTCGAGCAGGCTGTTTTTGCAAGACGGCTATTCACAAGTGAAATTGGTTCCATCACCAATGTTGTATTTATGGGCATGGGGGAACCTCTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGCATGACCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGCGGGCTTGTTCCGCAGCTCAGACGTTTCCTTCATGAATCCAACTGTACATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTTGACTTGCTTCTTGAGACACTTCGTGAGGAGCTTTCCTTCAAACACAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATAAATGACAGCAATGAAGATGCAAAGAGGCTGATCGAGCTTGTAAAGGGCATCCCTTGCAAGATCAATCTAATATCATTCAATCCACATAGTGGATCCTTCTTCAGACCAACCAAAGAGGAAAGGATGATTGAATTCCGGAATATGCTAGCTGAGGCAGGATGTGTAGTCCTTTTACGACCGAGTAGAGGCGACGATCAGATGGCTGCATGTGGTCAGTTAGGCAAGCCCGGCACCCTTCAAGCTCCAATGCTACGTGTACCTCAGCAATTCCAAACGGCGGTTGGAAGTTCAACCCATTCTTTATAA 1350 0.4326 MMNWMSMATSALANSSSTTFLLHKTIIPFSLTKTSPFLISFTTPSRRFLSASSLPSLSPDIDFNFSHYGDGNSVAVSRRGSKVLLKGMTYSELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHTDELEGLKKDFKQMLSEHADFKALAVKEIHAASDGTRKILFTLDDGLVIETVVIPCDTGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLFTSEIGSITNVVFMGMGEPLHNIDNVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLRRFLHESNCTLAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELSFKHKYKVLFEYVMLEGINDSNEDAKRLIELVKGIPCKINLISFNPHSGSFFRPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACGQLGKPGTLQAPMLRVPQQFQTAVGSSTHSL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1965 449 Pfam 4Fe-4S single cluster domain 193 288 - -
Mtr8g1965 449 PANTHER 23S RRNA METHYLTRANSFERASE 63 429 IPR040072 -
Mtr8g1965 449 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 82 427 IPR027492 GO:0030488|GO:0070475
Mtr8g1965 449 Pfam Radical SAM superfamily 189 355 IPR007197 GO:0003824|GO:0051536
Mtr8g1965 449 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 63 429 - -
Mtr8g1965 449 ProSiteProfiles Radical SAM core domain profile. 180 413 IPR007197 GO:0003824|GO:0051536
Mtr8g1965 449 CDD Radical_SAM 193 396 - -
Mtr8g1965 449 SUPERFAMILY Radical SAM enzymes 182 400 - -
Mtr8g1965 449 Gene3D Aldolase class I 146 426 IPR013785 -
Mtr8g1965 449 SFLD adenosine C2 methyltransferase (RlmN-like) 81 423 IPR004383 GO:0006364|GO:0008173
Mtr8g1965 449 Gene3D - 82 144 - -
Mtr8g1965 449 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 82 421 IPR027492 GO:0030488|GO:0070475
Mtr8g1965 449 SFLD Radical SAM 81 423 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1965 Mtr-Chr8 29540158 29546707 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1965 K06941 - gmx:100813692 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1965 8 29540158 29546707 Mtr8g1965 8 29540158 29546707 ECH