Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1958 ATGACTCATTTGCATCAAAACCTACCCTTCTCATTTCTACTAATATTTTCCTTAACAACATTGGTTTCTTCACATAGTAGGCCTTATTCACCTCCAAGTGTCACACACATAACCAATTCTTTTCCTCATGTCACAATTGAAAGTGCTTTTTCTAATGCTTTTGGAGCCTCAAATGTCAAGTTTCTTAGTAATGGGTCCATGGCCACCCTAGCTCTTGACAAAATTTCAGGCTCTGGCTTGGTATCCCAAAGTAGATACTCATATGGATTCTTTAGTGCTGCAATCAAATTACCTGCTGGTTTGTCACCTGGCGTTGTAGTTGCTTTTTATTTGTCAAATGCAGATAAATTTCCTCACAACCATGATGAGATAGATATTGAACTACTTGGTCATGACAAGAGAAATGATTGGGTTATTCAAACAAATATCTATGCCAATGGAAGTGTCAGAACAGGAAGAGAAGAGAAATTCTATCTCTGGTTTGATCCAACACAGCAGCACCATTATTATAGCATCTTGTGGAACAGTTATCACACAGTATTCTTTGTTGACAATATTCCAGTGAGAGAATTCATACACAAAAACACACCCTCTTTTATTTATCCATTGAAACCAATGTCATTATATGCAACAATATGGGATGGTTCAGAATGGGCTACACATGGAGGAAAATACCCTGTGAACTATAAATATGGACCATTTGTTGTTTCACTTGCTGAAATGGAATTAAGTGGTTGCATAAATGATCCAAAATCACCAATTTCTTCATGTTCTAAGTCCAACCCTTCAGGACTAGACCCTGTTGATGGAGCAGAGTTTACTAAGCTATCACAACAACAGATAGGAGCTATGGATTGGGCAAGAAGAAAACTCATGTTTTATTCTTATTGTAATGATAGAACTAGATACAAAGTTTTACCACCAGAATGTCAATGA 936 0.3686 MTHLHQNLPFSFLLIFSLTTLVSSHSRPYSPPSVTHITNSFPHVTIESAFSNAFGASNVKFLSNGSMATLALDKISGSGLVSQSRYSYGFFSAAIKLPAGLSPGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNIYANGSVRTGREEKFYLWFDPTQQHHYYSILWNSYHTVFFVDNIPVREFIHKNTPSFIYPLKPMSLYATIWDGSEWATHGGKYPVNYKYGPFVVSLAEMELSGCINDPKSPISSCSKSNPSGLDPVDGAEFTKLSQQQIGAMDWARRKLMFYSYCNDRTRYKVLPPECQ* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1958 311 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 32 238 IPR000757 GO:0004553|GO:0005975
Mtr8g1958 311 Gene3D - 28 310 - -
Mtr8g1958 311 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 310 IPR013320 -
Mtr8g1958 311 Pfam Glycosyl hydrolases family 16 49 230 IPR000757 GO:0004553|GO:0005975
Mtr8g1958 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 1 311 - -
Mtr8g1958 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 311 IPR044791 GO:0004553
Mtr8g1958 311 PIRSF EndGlu_transf 9 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mtr8g1958 311 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 310 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1958 Mtr-Chr8 29406088 29408240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1958 14 311 Glycoside Hydrolase AT1G10550 63.487 4.62e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1958 K08235 - gmx:100778993 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1958 8 29406088 29408240 Mtr8g1958 8 29406088 29408240 ECH