LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g1952	ATGGCTAGGGTTTATATTGGGAATTTGGACCCTCGAGTCACTGAGAGGGAACTTGAAGATGAATTTCGTGTGTATGGTGTTCTTCGCAGTGTCTGGGTGGCTCGCAGACCACCAGGATATGCATTTATCGAGTTTGATGATCGGAGGGACGCCCTTGATGCAATTCATGAATTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGAGTGGAGGAGGAGGAGGCCGTGGTGGTGGGCGTGGTGGACGCGGAGGGGATGACCTCAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGTTCACGCGGTGGTTCACGAGGCCTAGGAAATGGAAGGAGACGAAGTCCTAGTCCTTATTATCGGCGCCGTGGAAGTCCAAATTATGGTTATGATCGCAGGAGTTATAGCCCGCGTGGGAGAAGATCTCCAAGACGACGTAGCATAACACCTCCTCGTGGTCGTAGCTACAGCAGATCCCCTCCTCCATACCGTTATTCTCGCCGTGATTCACCTTATGCCAACGGAGATTAA	555	0.5099	MARVYIGNLDPRVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHELDGKNGWRVELSHNSKSGGGGGRGGGRGGRGGDDLKCYECGEPGHFARECRSRGGSRGLGNGRRRSPSPYYRRRGSPNYGYDRRSYSPRGRRSPRRRSITPPRGRSYSRSPPPYRYSRRDSPYANGD*	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g1952	184	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Mtr8g1952	184	SUPERFAMILY	Retrovirus zinc finger-like domains	85	111	IPR036875	GO:0003676\|GO:0008270
	Mtr8g1952	184	SMART	c2hcfinal6	93	109	IPR001878	GO:0003676\|GO:0008270
	Mtr8g1952	184	MobiDBLite	consensus disorder prediction	68	87	-	-
	Mtr8g1952	184	Pfam	Zinc knuckle	93	108	IPR001878	GO:0003676\|GO:0008270
	Mtr8g1952	184	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1	2	182	-	-
	Mtr8g1952	184	Gene3D	-	69	124	-	-
	Mtr8g1952	184	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Mtr8g1952	184	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Mtr8g1952	184	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	182	-	-
	Mtr8g1952	184	MobiDBLite	consensus disorder prediction	106	184	-	-
	Mtr8g1952	184	CDD	RRM_SRSF3_like	3	71	-	-
	Mtr8g1952	184	Gene3D	-	2	68	IPR012677	-
	Mtr8g1952	184	SUPERFAMILY	RNA-binding domain, RBD	3	88	IPR035979	GO:0003676
	Mtr8g1952	184	ProSiteProfiles	Zinc finger CCHC-type profile.	93	109	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g1952	Mtr-Chr8	29291304	29295645	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g1952	K12896		-	tcc:18609404	211.846

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr8g1952	8	29291304	29295645	Mtr8g1952	8	29291304	29295645	ECH