Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1946 ATGAGTAAGCAAATTTTGCTACTAGCTTTCATTCTTCATCTTCTCTTTGGAACATTCTCAGTTTTAGTTTCAGTTTCAGCTGCACCATCAACCACTTCACCTGCAAAACTTGTTTCTGGGTTTCTCTCCAATGCTGTTCCTGCTTTTTCTAAATGGGTTTGGTCACTTAAAGCTACCACCAAAACTGGGGTTTTGAGCAAATCCATGATGAAATTTGAGAGTGGTTACAATGTGGAAACTGTGTTTGATGGAAGTAAGCTTGGAATTGAGCCTTATGCTGTTGAGGTTTTGCATAATGGGGAGCTTCTTATTCTTGATTCTGCTAATAGTAACCTTTACAGAATCTCTTCATCACTCTCTTTGTATAGCAGACCGAAGCTGGTGGCTGGATCAGCTGAAGGATATTCTGGACATGTTGATGGGAGGCTCAGGGAGGCTAGGATGAACCATCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTGCAAATATGGCAATTAGGAAAATTAGTGATTCGGGGGTCACAACAATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCATGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGTAGTTGTTCCCTGCTTGTTGTAGACAGAGGAAACCAAGCCATTAGGGAGATCCAACTCCACTTTGATGATTGTGCATATCGATATGGCAGTGATTTCCCTCTTGGAATTGCGATGCTTGTTGGGGCTGGTTTCTTTGGTTATATGCTGGCATTGCTGCAGCGTAGGCTCGGTACAATTGTAGAGTCTCAGGATGCTCAGGTTCCACTAACAGTAATGCCTTCTGTTTCTCGAAGTACATATCAAAAGCCCTTGAAATCTGTCAGGCCTCCATTGATTCCATCAGAATATGAACCCGAAAAGCAGGAAGAAAGTTTCTTTGGATCTCTTGGGAAGCTTCTTGCGAATGCTGGCTCGTCAATGGTGGAGATAATGGGAGGATTATTTCCTGTTTTCAGAAGAAGACCACAGAGCTACCACCAATTTCAAAGGCAAACACTGATCCAACAATCTCAGAAGCAAGTGAATGATTGGCCAGCACAGGAAAGTTTCGTGATTCCTCGCGAAGATGAACCACCGTCTATCGACACAAGGGCGCCAACCCCTCGAAAAACCTATCCTTTCATGTCGAAAGATGCAGAAAAAATTCAACAGTTGCGGCAAAGTAAAGCATTCTACAGTGGGTGGGATGGAGATCAACATCAGCAACAACAACCACAACCACAACCACAACCACAACAACAACAGCAACAACAGCAGCAGCAGCAACAAAAACATCATTATCGCCATCAGTACCAATCATCGGTCCCTCACACTTTCTATGAGCAGACCAATGAGACAACCAATGAGGTAGTTTTCGGGGCAGTGCAGGAACAGGATGGGAAGAAGGAATCTGTGGTCATCACACCTGTTGAATATGGAGGCTCATTGTACGAACATCGCGATTTTCGGTCTCGAATGAGTTACATGGGTTATAAGTATTGA 1566 0.4361 MSKQILLLAFILHLLFGTFSVLVSVSAAPSTTSPAKLVSGFLSNAVPAFSKWVWSLKATTKTGVLSKSMMKFESGYNVETVFDGSKLGIEPYAVEVLHNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGITVDDRGNIYVADTANMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLVVDRGNQAIREIQLHFDDCAYRYGSDFPLGIAMLVGAGFFGYMLALLQRRLGTIVESQDAQVPLTVMPSVSRSTYQKPLKSVRPPLIPSEYEPEKQEESFFGSLGKLLANAGSSMVEIMGGLFPVFRRRPQSYHQFQRQTLIQQSQKQVNDWPAQESFVIPREDEPPSIDTRAPTPRKTYPFMSKDAEKIQQLRQSKAFYSGWDGDQHQQQQPQPQPQPQQQQQQQQQQQQKHHYRHQYQSSVPHTFYEQTNETTNEVVFGAVQEQDGKKESVVITPVEYGGSLYEHRDFRSRMSYMGYKY* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1946 521 Pfam NHL repeat 149 174 IPR001258 GO:0005515
Mtr8g1946 521 MobiDBLite consensus disorder prediction 423 459 - -
Mtr8g1946 521 Gene3D - 40 233 IPR011042 -
Mtr8g1946 521 SUPERFAMILY NHL repeat 77 235 - -
Mtr8g1946 521 PANTHER - 1 521 - -
Mtr8g1946 521 PANTHER NHL REPEAT PROTEIN 1 521 - -
Mtr8g1946 521 MobiDBLite consensus disorder prediction 378 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1946 Mtr-Chr8 29199697 29203950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1946 - - mtr:MTR_8g063760 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1946 8 29199697 29203950 Mtr8g1946 8 29199697 29203950 ECH