Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1624 ATGGCGACACCATTCTCTACAATCCTTCAAAAGTCTCGTAACATCGCTGCAACTTTTCTACTGTGTAAACCATACTCTTCCACAGTCAGAAACCGTAGAAACCTCTTCGCCAGAATAAGCCCCCTTGGCGACCCTTCAATCAGCATTTCCCCCATTCTCGAAAACTGGGTCCAAGAAGGTAACCCTCTCGGTTACAAACAGCTTCAGCGCATCATCAAATCCCTCCGCTCTAGCAAACGCTTCAGTCAAGCACTCCAGGTTTCTGAATGGATGAGTAGCAAAGGTCTATGCCCAATTTCAGCAAAAGACCATGCCGTGCAACTAAATCTTATTGGTAAAGTTCGTGGACTTGATAGTGCGAAGAGCTATTTCCAGAATTTAAGTGATGAAGATAAAACTGAAAAGGCTTATGGTGCTCTTTTGAATTGTTATGTAAGAGAAGGATTGGTTGATAAGTCACTCTCCCTGATGCAGAAGATCAAGGATCTGGGTTTTATTTCTGTTCTAAATTACAATAATATTATGTGTCTTTACTTGCAAACTGAGCAGTATGAGGAAGTCTTTGGTGTTTTGGAATCGATGAAAAAGGACGGTGTTTCTCCCGACACATTCAGCTATAGGATATGCATAAACTCTTATGGCACAAGGTCTGATTTTTTTAATATGGAGAAACTATTGGAAGAAATGGAACTGCAAAGCCACGTCAGATCAGATTGGGCCACATATGCTATGGTGGCTAACTACTTCATCAAAGCAGACCTGAAAGAGAAAGCTTTAGTCTACCTGAAGAAATGTGAGGACAAAGTAGACAAACGCGACACGATTGCATACAACTATCTGATTTCACACTATGCAAGTCTTGGAAACAAAAAAGCCATGATGAGATTATGGAAACTTCAGAAAGAGAACTGTAAGAAGCAACTTAACAGGGAATATATAACCATGTTGGGTTCTTTGGTGAAGCTGGGTGACTTTGACGAAGCTGAAAAACTTCTTGCAGAGTGGGAGATATCTACTAATTCTTATGATTTTAGGGTGCCAAACATCCTTTTGATTGGTTATTCCAAGAATGGATTGATCGAAAAAGCAGAAACAATGCTGCAAAGCATAATTGAGAAAGGGAAGAATCCTATTCCTAACAGTTGGGCTATCATTGCTGCTGGGTATGTTGCCAAAGAGAATATGGAGAAAGCATTTCAATGCATGAAGAAAGCTGTGTCTGTACAACCCAAGAATAAAGGTTGGAGACCAAAAATTGATGTTCTTTCCAGCATTTTGAGTTGGGCTATCAATAACAGAGATATAGATGAAGTAGAAGATTTCGTGAATTCGTTGAAGAATGCAACTTCAATGAATAGGGATATGTATCTGTCCTTGATCAAGATGTTTGATAGATCTGTGAAAGAGGTTGATAAAAGTTTAGACAGTATGAGAGCTGATAAAATAGAGGTTGATGAGATTTGGGAAAGTATGAAAGATGATAAAACGGAGCTTGATTAA 1500 0.3933 MATPFSTILQKSRNIAATFLLCKPYSSTVRNRRNLFARISPLGDPSISISPILENWVQEGNPLGYKQLQRIIKSLRSSKRFSQALQVSEWMSSKGLCPISAKDHAVQLNLIGKVRGLDSAKSYFQNLSDEDKTEKAYGALLNCYVREGLVDKSLSLMQKIKDLGFISVLNYNNIMCLYLQTEQYEEVFGVLESMKKDGVSPDTFSYRICINSYGTRSDFFNMEKLLEEMELQSHVRSDWATYAMVANYFIKADLKEKALVYLKKCEDKVDKRDTIAYNYLISHYASLGNKKAMMRLWKLQKENCKKQLNREYITMLGSLVKLGDFDEAEKLLAEWEISTNSYDFRVPNILLIGYSKNGLIEKAETMLQSIIEKGKNPIPNSWAIIAAGYVAKENMEKAFQCMKKAVSVQPKNKGWRPKIDVLSSILSWAINNRDIDEVEDFVNSLKNATSMNRDMYLSLIKMFDRSVKEVDKSLDSMRADKIEVDEIWESMKDDKTELD* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1624 499 Pfam PPR repeat 348 374 IPR002885 -
Mtr8g1624 499 Pfam PPR repeat 136 165 IPR002885 -
Mtr8g1624 499 Pfam PPR repeat 312 334 IPR002885 -
Mtr8g1624 499 Gene3D Tetratricopeptide repeat domain 65 256 IPR011990 GO:0005515
Mtr8g1624 499 Pfam PPR repeat family 168 213 IPR002885 -
Mtr8g1624 499 PANTHER OS12G0527900 PROTEIN 27 491 - -
Mtr8g1624 499 SUPERFAMILY HCP-like 197 412 - -
Mtr8g1624 499 TIGRFAM PPR: pentatricopeptide repeat domain 348 374 IPR002885 -
Mtr8g1624 499 TIGRFAM PPR: pentatricopeptide repeat domain 171 203 IPR002885 -
Mtr8g1624 499 TIGRFAM PPR: pentatricopeptide repeat domain 136 165 IPR002885 -
Mtr8g1624 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Mtr8g1624 499 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Mtr8g1624 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Mtr8g1624 499 Gene3D Tetratricopeptide repeat domain 289 411 IPR011990 GO:0005515
Mtr8g1624 499 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 27 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1624 Mtr-Chr8 23790848 23795665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1624 35 494 EF-hand Containing Proteins AT1G02150 32.468 3.52e-86 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1624 - - lja:Lj0g3v0287449.2 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1624 8 23790848 23795665 Mtr8g1624 8 23790848 23795665 ECH