Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1122 ATGTTACAAACTTTCACTTGTTGCTTTACCTTTCTTCATAAAACCAAATCTCCCTCCAACCAACCAAAAAGATCACCCAACATCAAACTTTGTTCCATTTCCGACATATCAATCTCTTCTTTCATTCAAAACGAAGAATCTGGCCAATTTCGACAAATTTTCAAGCTTATCGACACCAACAATGACGGAAAGATTTCAACCACAGAGCTCAGTGAAGTGCTTTCATGTCTAGGATACAACAAATGCACAGCTTCTAAAGAAGCTGAGAGCATGATAAGAGTTTTGGACTTCAATGGAGATGGATTTGTAGATATTGATGAGTTCATGTTTGTCATGAAAGAAGATGGAAACTTTGGCAAAGGAAAAGAACATGATCATGATGAGTACTTAATGGATGCTTTTCTTGTGTTTGATATTGATAAGAATGGATTAATCTCACCTAAGGAATTGAGGAGAGTTTTGGTTAATCTTGGTTGTGAAAATTGTAGTTTAAGGGATTGTAAGCGTATGATTAAAGGGGTTGATAAGAATGGAGATGGGTTTGTAGATTTTGAAGAATTTCGATCTATGATGAAAATAGGACTTAAATTTAATTAG 597 0.3484 MLQTFTCCFTFLHKTKSPSNQPKRSPNIKLCSISDISISSFIQNEESGQFRQIFKLIDTNNDGKISTTELSEVLSCLGYNKCTASKEAESMIRVLDFNGDGFVDIDEFMFVMKEDGNFGKGKEHDHDEYLMDAFLVFDIDKNGLISPKELRRVLVNLGCENCSLRDCKRMIKGVDKNGDGFVDFEEFRSMMKIGLKFN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1122 198 Gene3D - 118 196 - -
Mtr8g1122 198 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 36 196 - -
Mtr8g1122 198 CDD EFh 129 192 IPR002048 GO:0005509
Mtr8g1122 198 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Mtr8g1122 198 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Mtr8g1122 198 SUPERFAMILY EF-hand 38 192 IPR011992 -
Mtr8g1122 198 SMART efh_1 49 77 IPR002048 GO:0005509
Mtr8g1122 198 SMART efh_1 129 157 IPR002048 GO:0005509
Mtr8g1122 198 SMART efh_1 87 115 IPR002048 GO:0005509
Mtr8g1122 198 SMART efh_1 166 194 IPR002048 GO:0005509
Mtr8g1122 198 CDD EFh 49 113 IPR002048 GO:0005509
Mtr8g1122 198 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Mtr8g1122 198 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Mtr8g1122 198 Pfam EF-hand domain pair 128 192 IPR002048 GO:0005509
Mtr8g1122 198 Pfam EF-hand domain pair 50 113 IPR002048 GO:0005509
Mtr8g1122 198 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Mtr8g1122 198 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Mtr8g1122 198 PANTHER CALCIUM BINDING PROTEIN 36 196 - -
Mtr8g1122 198 Gene3D - 14 115 - -
Mtr8g1122 198 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Mtr8g1122 198 ProSiteProfiles EF-hand calcium-binding domain profile. 162 197 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1122 Mtr-Chr8 13685703 13686493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1122 130 198 EF-hand Containing Proteins AT1G24620 34.783 1.90e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1122 - - gmx:100799475 273.478