Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1114 ATGTTACACTCACTACCACCACCTTCAAAATTCCTCAATGTCCACAAAACAACGTTACAACGTTCATTCAAAACATGTCTTAAACTTTTCCACTCACTCAAAAAACACGAACACAACCTGTTCGAAAAAATTCCCCAACCAAATGCTTCCTCGATTAACCGCTCCATGCTTAATTTCTTACATAAAAATCTTCCCTTTCAAGCTCTTTCCGTATTCAAGAACCAAACCCAGTTTCCGTTTCTTCAAAATATCGATGAGGTGACACTTGCCTTGTCGTTCAAGGCATGTCGGGGTGAGTTCATATTGGGTGCCCAGATTCATGGATTTGTTGTGGCTACTGGGTTTGTTTCACGTGTTACTGTGTCGAATTCGTTGATGAAAATGTACTGTAAAGCTGGGAGATTTGAACTTGCTTTGTGTGTTTTCGAGGGTTTGAGTTGTCCTGATATTGTTTCGTGGAATACTATTCTTTCTGGGTTTGAGAAGAGTGTTGATGCTTTGAATTTCGCGTGTTTTATGCATTTGAATGGGGTGGTTTTTGATCCTGTGACGTATACCACTGCTCTTTCGTTTTGTTGGGATAGGGATTATTGGGATGATCATGGGTTTTTGTTTGGGTTGCAGTTGCATTCTCTTGTGGTTAAATGTGGATTTGGCTGTGAAGTTTTTATAGGGAATGCGCTTGTGACAATGTATTCGAGGTGGGGGGGATTAGATGAGGCGGGGAGAGTTTTTAATGAAATGACTATAAGAGATTTGGTTTCTTGGAATGCGATGCTTTCTGGGTATGCTCAAGAGGGGGAGTGTTATGGGTTGGAAGCTGTTTTATTGTTTGGCAACATGGTGAGAGAAGGGATGTTGCTTGACCATGTTTCGTTAACGGGTGCGATTTCTGCTTGTGGTTATACCAAAAACTTGGAGTTTGGGAAGCAGATTCATGGTTTGGCTCAAAAATTGGGTTATGGAACACATGTAGCAGTTTGCAATGTTTTGATTTCGACTTATTCAAAATGTAAGGTTCTTAGAGATGCGAAGGCAGTTTTTCAAGACATGAGTGCTCGCAATGTAGTATCTTGGACGACACTGATTTCAATTGACGAAGAGAATGTGGTGTCTCTCTTTAATGCTATGAGAGTTGATGGTGTTTATCCAAATGATGTTACATTTATAGGATTATTGCATGCTATAACAATCAGGAATATGGTGAAAGAAGGTCTAATGGTTCATGGGTTGTGCTTAAAAAGTTGCTTATCATCAGAACAAAATGTCTCCAATAGCCTAATTACCATGTATGCCAAGTTTGAGTCGATTCAAGAATCAAAGAAGATTTTTGAGGAGCTTAACTATCAAGGAACAATATCATGGAATGCATTAATTTCAGGGTATGCTCAAAACGGTTTGTGTAAAGAAGCTTTCCTTACATTTTTATCTGCAATAAAGGAGATAAAACCCAACCAATACACATTTGGTAGTGTATTAAATGCCATTGCTGCAGCTGAAGATATATCTTTGAAACACGGGCAACGTTGCCATTCTCACTTGATCAAACTTGGTTTAAACACTGACCCATTTGTTGCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAACATTAACGAGTCTCAAAGAGTATTCAACGAGACACCTGAAAAAACCCAGTTTTCTTGGACGGGAATGATATCTGCCTACGCCCGCCATGGAGACTACGAGTCAGTGATGAGTTTATACAAGGAAATTGAGAGGGAAGGAAGCAATCTTGATTCCATCACTTTCCTATCTGTTTTAGCTGCATGTTGTAGAAAGGGTATGGTTGATGTAGGCCATATAATATTTGACTCTATGGTGAAGAAACATTCAATTGAACCAACCCCTGAGCATTACTCAATTATGGTAGACATGTTGGGCCGTGTGGGACGGCTAGATGAGGCGGAAGAGTTGATGCATCAGATTCCAGGCGGACCTGGACTGTCAGTGTTGCAAAGCTTGCTTGGGTCTTGTAAATTACATGGGAATGTGGAGATGGCAGAGAGAGTCGTTGATAGTTTAATACAAATGGATCCTGGAAGTTCAGGTCCATATGTGTTGATGGCAAACTTGTATGCCGAGAAAGGGAATTGGGAGAAAGTTGCTGAAGTGAGAAAAGGGATGAGAGGGAGGGGAGTAAAGAAGGAAGTGGGATTCAGTTGGGTGGATGTTGCTAATGTTGATTCCTTGCATTTGCATGGTTTCTCATCTGGTGACAAGTCACACCCAGAGTCTGAGACTATTGATAGAATGGCAGAGTTTTTGGGATTGCAAATGATATTTTCGAAAGAGAGTGGAGGGACAGGAGGTGATTGGCATCGAGAGTTTGAACTAGTGAGCCATGGATAG 2376 0.4104 MLHSLPPPSKFLNVHKTTLQRSFKTCLKLFHSLKKHEHNLFEKIPQPNASSINRSMLNFLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACRGEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGFEKSVDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLISIDEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEIKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGSSGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLHLHGFSSGDKSHPESETIDRMAEFLGLQMIFSKESGGTGGDWHREFELVSHG* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1114 791 Pfam PPR repeat family 554 601 IPR002885 -
Mtr8g1114 791 PANTHER OS07G0578800 PROTEIN-RELATED 31 479 IPR045215 GO:0003723|GO:0009451
Mtr8g1114 791 PANTHER OS07G0578800 PROTEIN-RELATED 481 567 IPR045215 GO:0003723|GO:0009451
Mtr8g1114 791 PANTHER OS07G0578800 PROTEIN-RELATED 565 777 IPR045215 GO:0003723|GO:0009451
Mtr8g1114 791 PANTHER OS07G0670000 PROTEIN 31 479 - -
Mtr8g1114 791 PANTHER OS07G0670000 PROTEIN 481 567 - -
Mtr8g1114 791 PANTHER OS07G0670000 PROTEIN 565 777 - -
Mtr8g1114 791 Gene3D Tetratricopeptide repeat domain 166 305 IPR011990 GO:0005515
Mtr8g1114 791 Gene3D Tetratricopeptide repeat domain 527 741 IPR011990 GO:0005515
Mtr8g1114 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Mtr8g1114 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 288 IPR002885 -
Mtr8g1114 791 Pfam E motif 670 732 IPR046848 -
Mtr8g1114 791 Gene3D Tetratricopeptide repeat domain 413 513 IPR011990 GO:0005515
Mtr8g1114 791 Gene3D Tetratricopeptide repeat domain 306 409 IPR011990 GO:0005515
Mtr8g1114 791 Gene3D Tetratricopeptide repeat domain 10 165 IPR011990 GO:0005515
Mtr8g1114 791 Pfam PPR repeat 254 285 IPR002885 -
Mtr8g1114 791 Pfam PPR repeat 226 249 IPR002885 -
Mtr8g1114 791 Pfam PPR repeat 425 447 IPR002885 -
Mtr8g1114 791 Pfam PPR repeat 627 650 IPR002885 -
Mtr8g1114 791 Pfam PPR repeat 123 143 IPR002885 -
Mtr8g1114 791 Pfam PPR repeat 453 475 IPR002885 -
Mtr8g1114 791 Pfam PPR repeat 327 355 IPR002885 -
Mtr8g1114 791 TIGRFAM PPR: pentatricopeptide repeat domain 327 357 IPR002885 -
Mtr8g1114 791 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Mtr8g1114 791 TIGRFAM PPR: pentatricopeptide repeat domain 123 143 IPR002885 -
Mtr8g1114 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 623 IPR002885 -
Mtr8g1114 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1114 Mtr-Chr8 13596132 13601063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1114 81 757 Glycoside Hydrolase AT3G49170 31.000 1.89e-104 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1114 - - cam:101513383 1350.5