Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1088 ATGCATATCCTTAACCCTTCAATGCTATTTGCACCCCCAAATACCAAAGAAAAACAATGTCATGATACATCTTTTCTACCATGTCAAGTTACTAACATACCCTCAGAGTTCATATGGCCTGAGCATGAAAAACCATGTCTTACACCACCAAAACTTCAAGTTCCACCAATTGACTTAAAAGCCTTTCTCTCTGGTGATCCAAAAGCTATTTCAAATGCTTGTTCACAGGTGAATGATGCATGCAAGAAGCATGGTTTTTTCCTTGTTGTTAACCATGGAGTTGATAAAAAACTATTAGCTCAAGCTCATAAGCTTGTAGATGATTTCTTCTGCATGCAACTCTGTGAGAAACAAAAAGCTCAAAGGAAGGTTGGAGAACATTGTGGTTATGCTAATAGTTTCATTGGAAGATTTTCTTCCAAACTTCCTTGGAAGGAAACACTTTCTTTTCGTTACTCAGATGATAAGTCATGCAGAACTGTGGAGGACTATTTTGTAAATGTCATGGGAGAAGATTTCAGGCAATTTGGGAGTGTATACCAAGACTATTGTGAAGCTATGAGCAATCTCTCTCTTGGAATCATGGAACTTCTTGGGATGAGTCTAGGAGTTGACAAAGAATATTTTAGACATTTTTTTGAAGCAAATGACTCAGTAATGAGATTGAACTACTATCCACCATGCAAAAATCCTGATTTAGCTTTAGGAACTGGACCCCATTGTGACCCTACTTCCTTAACCATTCTCCACCAAGATCAAGTTGAGGGTCTTCAAGTGCTTGTTGATGGAATATGGCACTCAATTGTTCCGAAAGAAGATGCCTTTGTGGTCAACATTGGTGACACATTTATGGCGCTATCAAATGGGATATTCAAGAGTTGTTTACATAGAGCAGTTGTAAATGACACAATAGTGAGAAAATCACTAGCATTTTTTCTATGTCCAAATGAAGAAAAAATTGTCACTCCTCCAAAGGAACTAATTAACAAGGAGAATCCAATGATATATCCAAACTTTACATGGCCAAGTTTACTTGAATTTACTCAAAAACATTACAGGGCTGATGAAAGAACCCTAGATGCTTTTTCAAGGTGGCTACAAGAGAAACAACTCAACTAA 1119 0.3735 MHILNPSMLFAPPNTKEKQCHDTSFLPCQVTNIPSEFIWPEHEKPCLTPPKLQVPPIDLKAFLSGDPKAISNACSQVNDACKKHGFFLVVNHGVDKKLLAQAHKLVDDFFCMQLCEKQKAQRKVGEHCGYANSFIGRFSSKLPWKETLSFRYSDDKSCRTVEDYFVNVMGEDFRQFGSVYQDYCEAMSNLSLGIMELLGMSLGVDKEYFRHFFEANDSVMRLNYYPPCKNPDLALGTGPHCDPTSLTILHQDQVEGLQVLVDGIWHSIVPKEDAFVVNIGDTFMALSNGIFKSCLHRAVVNDTIVRKSLAFFLCPNEEKIVTPPKELINKENPMIYPNFTWPSLLEFTQKHYRADERTLDAFSRWLQEKQLN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1088 372 Pfam 2OG-Fe(II) oxygenase superfamily 217 315 IPR044861 -
Mtr8g1088 372 PRINTS Isopenicillin N synthase signature 77 94 - -
Mtr8g1088 372 PRINTS Isopenicillin N synthase signature 240 261 - -
Mtr8g1088 372 PRINTS Isopenicillin N synthase signature 275 301 - -
Mtr8g1088 372 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 155 IPR026992 -
Mtr8g1088 372 SUPERFAMILY Clavaminate synthase-like 26 355 - -
Mtr8g1088 372 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 27 367 - -
Mtr8g1088 372 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 215 315 IPR005123 -
Mtr8g1088 372 PANTHER GIBBERELLIN 20-OXIDASE 27 367 - -
Mtr8g1088 372 Gene3D - 24 354 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1088 Mtr-Chr8 13308782 13311826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1088 14 353 Glycosyltransferase AT5G59530 28.653 1.72e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1088 K05282 - gmx:100777224 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1088 8 13308782 13311826 Mtr8g1088 8 13308782 13311826 ECH