Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0917 ATGTTCAGCAAGCTCCATTTCAAAAAGCAGCTACCTTTCCCTCCATCCCCTTTCTCATTCTTCATAGAATGCTTCTATTTCTCTTCTCACCAACCACATCCATGGAACTCCTCAAGCAGACTCAGAGCTTCTATGCCAATTCCAAATCAAACCCATTTCAATGACCCTAACACTGTTCATTTGTTTTGTTCCAACGCCCTCAAAATCTCAGCCAAAAAGGGCTATCTTCCTGAAGGAAAACAGTTACATGCCCATTTGATAAAGTTTGGATTTTGTCAAGTCCTTTCCTTACAAAACCAGATTTTGAGTGTTTATCTTAAATGCCAAGAAGCTGAAGATGCAAAGAAACTGTTTGAGGAATTGCCTGTGAGAAATGTTGTTTCGTGGAATATTATGATTCGTGCTAGTGTTGGACGTAACGATGAAAATGAATCGAGTGGCATGCGATTGTGTTTTTCTTATTTTCGAAGGATGTTGTTGGAAATGATGGTTCCTGATCATATAACTTTTAATGGTTTGATTTGTTTGTGTACTCAGTTTAATGATATTGAGATGGGAGTTCAGTTGCATTGTTTTACCGTGAAAGTTGGATTTGATTTGGATTGTTTTGTTGGTTGTGCCCTTGTTGGTTTATATGCAAAATGTGGTTTTGTTGAGAATGCAAGGAGGGTTTTTTGTGATGTCTCGTGTAGAGATTTGGTTATGTGGAATGTGATGGTTTCTTGTTATGTCTTCAATAGTTTACCTGAAGAGGCTTTTCGCGTCTTCAATTCAATGCGGTTGGATGTTGTGAACGGGGACGAGTTCACTTTTAGTAGCTTGCTTAGTGTAATAAGTGATGATGCTTTGGAATATTATGATTTTGGAAAGCAAGTTCATAGTCTTGTTCTGAGACAATCATTTGATTCAGATGTTTTAGTTGCTAGTGCATTGATCAACATGTATGCCAAAAGCGAAAATATTATTGATGCACGAAGAGTATTTGATGAGATGTCGATTCGAAATGTTGTGGCATGGAACACCATGATTGTTGGGTTTGGGAATCACGGTGATGGTAACGAGGTAATGAAGCTTGTCAAAGAGATGCTTCGCGAAGGGTTTCTTCCAGATGAATTGACTATTTCTAGCATTATAAGTTCGTGTGGCTATGCTTCTGCCATTACCGAAACACTGCAAGTGCATGCTTTTGCGGTTAAATTATCATGTCAAGATTTTTTATCTGTAGCCAATTCTTTGATTAGTGCTTACTCCAAGTGTGGTAGCATTACTAGTGCATTTAAATGCTTTGAATTAACTTCACAGCCTGATCTAGTTACATGGACTTCATTGATATATGCATATGCATTCCATGGTCTTGCCGAAAAATCAACTGAGATGTTTGAGAAAATGCTATCATATGGCATAAAACCAGATCGAATCGCTTTTCTCGGCGTTCTCTCGGCTTGTGCTCATTGTGGGCTGGTGACAAAGGGACTTCACTACTTCAAATTAATGACCAATGCATATCAGATTGTTCCTGATTCAGAACATTACACATGTCTTGTTGATCTTCTAGGAAGATATGGTCTTATAAATGAAGCTTTTGAAATCTTGAGGTCAATGCCAATTGAAGTAGATTCAGATACCTTAGGAGCATTTATTGGATCTTGCAAACTACATTCAAATATGGAACTGGCTAAATTGGCTGCAGAAAAACTCTTCCTCATTGAACCAGAAAAGAGTGTAAACTATGCAGTGATGTCGAACATTTTCGCTTCTCAAAAGCATTGGTATGACGTGGAAAGAATTCGCAAAACGATGGAAGACAAACGTGATGCAAAAGTCCCAGGTTGTAGTTGGATTGAGATTGGTAACCAAATTCATTCATTTGTATCCAATGATAAATCACACCCTAATGCTTTAGAAATGTATGTTACATTAAACATGCTGCTTAGGCCAATGAAGGAACAAAATGGTATTCATTTGTAA 1968 0.378 MFSKLHFKKQLPFPPSPFSFFIECFYFSSHQPHPWNSSSRLRASMPIPNQTHFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFVSNDKSHPNALEMYVTLNMLLRPMKEQNGIHL* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0917 655 TIGRFAM PPR: pentatricopeptide repeat domain 309 336 IPR002885 -
Mtr8g0917 655 TIGRFAM PPR: pentatricopeptide repeat domain 337 371 IPR002885 -
Mtr8g0917 655 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Mtr8g0917 655 TIGRFAM PPR: pentatricopeptide repeat domain 234 260 IPR002885 -
Mtr8g0917 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 262 IPR002885 -
Mtr8g0917 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Mtr8g0917 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Mtr8g0917 655 Gene3D Tetratricopeptide repeat domain 289 393 IPR011990 GO:0005515
Mtr8g0917 655 Gene3D Tetratricopeptide repeat domain 185 285 IPR011990 GO:0005515
Mtr8g0917 655 Gene3D Tetratricopeptide repeat domain 49 184 IPR011990 GO:0005515
Mtr8g0917 655 Gene3D Tetratricopeptide repeat domain 407 634 IPR011990 GO:0005515
Mtr8g0917 655 Pfam PPR repeat 438 468 IPR002885 -
Mtr8g0917 655 Pfam PPR repeat 510 534 IPR002885 -
Mtr8g0917 655 Pfam PPR repeat 410 430 IPR002885 -
Mtr8g0917 655 Pfam E motif 553 615 IPR046848 -
Mtr8g0917 655 PANTHER OS07G0259400 PROTEIN 46 635 - -
Mtr8g0917 655 PANTHER OS07G0578800 PROTEIN-RELATED 46 635 IPR045215 GO:0003723|GO:0009451
Mtr8g0917 655 Pfam PPR repeat family 232 276 IPR002885 -
Mtr8g0917 655 Pfam PPR repeat family 334 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0917 Mtr-Chr8 11250452 11252742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0917 62 649 Glycoside Hydrolase AT3G49170 32.215 2.04e-107 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0917 - - gmx:100778378 945.266