Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0820 ATGACATTATGCGTCTTCTCTAAACACCAAATCTTCATGAATAACCTATCACCGTTTCATCATCTTAATCCTCATTCTCTTCACAACCCAAAAACCCAAATGCTACCTAGAAGCCTTTCACCAATTTCAATTTCATTTTCATCGCCCAAATTTTCTCCATTTTTCCACACTTTTCATGAGTTGAATGAGTTAAGAACTTTGAATTCTGTTATGGAATTGCATGCCCAGATTATTAAAACACCTAAAAATTATAACTTTGCTACAATTGATGGAACCATGATGAGAAATTATTTGGAATTTGGTGATTTTTTGTCAGCAATAAAGATATTCTTTGTGGGTTTTGCAAGAAATTATCTTTTGTGGAACTCTTTTCTTGAGGAATTTGAAAGTTTTGGAGGTGACCCATTTGAGATTTTGGTAGTTTTCAATGAAATGTATAGTAAAGGAGTTGAATTTGATAGCAAAGCTTTCACCTTTGTTCTGAAAATTTGCTTGGCTTTAAGGGAATTTTTGTTTGGTTTGGAAGTTCATGCTTGTTTGATCAAGAAAGGGTTTCATGTTGATGTACACTTGAGTTGTGCATTGATCAATTTCTATGGGAAGTGTTGGAGTATAGATAAAGCTAATCAAGTATTTCATGAGACTCCTTATAAAGAAGATTTTTTGTGGAATACTATAGTTATGGCAAATTTGAGGAGTGAGAGGTGGAAGAATGCATTAGAATTGTTCTGTGACATGCAGAGAGATTCTGCTAAAGCCACTGTTGGCACCACTGTCAAGATGTTGCAAGCATGTGGAAAATTAAAAGCTTTGAATGAAGGGAAACAGCTTCATGGGTATGCTTTAAGATTTGGACTAGTTTCAAATACTTTAGTTTGCAATTCCATTATTAGCATGTACTCTAGAAACAGTAGATTCAAACTTGCTAGAGCGGTTTTCGATTCGATGGAGGATCATAGTCGTAACTTATCATCTTGGAACTCGGTAATTTTTAGTTATGCTGTCGATGGCTGTTTAAATGATGCATTGGATACTATCCGCAATGGAATGGAGTGTTCCGGAATTAAACCGGACATTATAACTTGGAATTCAATTTTGTCGGGTTATCTTCTTCGGGGATCATTTGAAATGGTTCTCACTAGTTTTCGGAGTCTACATAGTTTAGGCTTCAAGCCGGATTCATGCTCAGTAACTAGTGCTCTACAAGCGGTTATTGAATTAGGTTTCTTTAAATTAGGGAAAGAAATTCATGGTTACATAATGAGAAGTAATCTTAACTATGATGTCTATGTTTGTACATCACTGGTGGATATGTATGTTAAGAATGATTGCTTAGAAAAAGCTCAGGCAGTGCTCCATCGTGCGAAAAACAAAAACGTTTGCGCTTGGAATTCGTTGATATCAGGCTACTCCTTCAAGGGACAGTTTGGTGAAGCCGTAAAACTATTGAACCAAATGGTGGAAGAAGGGATAACACCTGATTTAGTGACATGGAACGGTTTGGTTTCTGGTTATTCAATGCAAGGCCGTATCGATGAAGCTTTGACTATCATCAATCGGATCAAGAGTTCCGGAATCACTCCTAATGTGGTGTCTTGGACTGCTTTGATATCTGGGTGTTCTCAAAACGAGAAGTACATGGACGCCCTAAAGATTTTCAGTCAAATGCAAGCCGAGAATGTAAAACCTAACTCAACCACGATTTGCAGCTTACTTTGTGCATGTGCAGGTCCATCTCTGTTGAAGAAAGGTGAAGAGTTACATTGCTTTAGTATGAAACTAGGGTTTGTGGATGATATATACGTTGCAACAGCACTCATTGACATGTATAGTGAAGCAGGAAAACTAAAAGTAGCATACAATGTTTTCAACAAAATTCAAGAGAAAACACTTCCATGTTGGAATTGCATGATGATGGGATATGCCATTCATAGCCATGGAGAAGAAGTAATGATTCTTTATGACAAGATGCGTGAAAGACATATTAGACCTGACGCGATAACGTTCACGGCTCTTCTATCTGCCTGCAAGAATTCGGGTTTAGTTGATGAAGGATGGAAGTATTTTGACAGTATGCAAGAAGATTACAATATCGTCCCAACAATTGAGCACTACTGTTGCATGGTAGACCTTCTAGGAAAATCCGGTTTTCTCGACGAAGCTTCGCATTTCATCGAAACTATGCCAATTAAGCCAGATGCTAGTATTTGGGGTGCTCTTCTTGCATCATGCAAAATTCACAAAAATATTAAGCTAGCTGAGATTGCAGCAAGGAAGCTTTTCAAGATGGAACCAAATAATTCTGCTAACTATGTTTTGATGATGAATTTGTATTCGAGTTTAAACCGATGGGTTGCCGTTGAGCGTCTGAAACACTCGATGACTGTGTTGGCGATGAAAATTCCACCAGTTTGGAGCTGGACACAAGTTAATCAAAGTATTCATGTGTTCTCTACAGAAGGAAGACCACATCCAGAAGAAGGGGAAATATATTTCGAGTTATATCAATTAATCTCCGAAATTCGTAAGCTCGGTTATGCACCTGATCTCAATTGTGTATGTCAGAACATTGATGACAATGAGAAAGAGAAAATTCTTATGAGTCACACTGAGAAGTTGGCAATGGTATATGGAGTGATGAAAATGAAAGGTGGATCACCAATTAGGATCGTTAAGAACACCAGAATTTGTTTTGACTGTCATACAGTAGCGAAATACATTTCTTTGGTTCGAAAACGCGAGATTTTACTCCGAGATGGTGGCCGTTTTCACCATTTTAAAAATGGAAAGTGTGCTTGTAATGATCGTTGGTAA 2814 0.3753 MTLCVFSKHQIFMNNLSPFHHLNPHSLHNPKTQMLPRSLSPISISFSSPKFSPFFHTFHELNELRTLNSVMELHAQIIKTPKNYNFATIDGTMMRNYLEFGDFLSAIKIFFVGFARNYLLWNSFLEEFESFGGDPFEILVVFNEMYSKGVEFDSKAFTFVLKICLALREFLFGLEVHACLIKKGFHVDVHLSCALINFYGKCWSIDKANQVFHETPYKEDFLWNTIVMANLRSERWKNALELFCDMQRDSAKATVGTTVKMLQACGKLKALNEGKQLHGYALRFGLVSNTLVCNSIISMYSRNSRFKLARAVFDSMEDHSRNLSSWNSVIFSYAVDGCLNDALDTIRNGMECSGIKPDIITWNSILSGYLLRGSFEMVLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKREILLRDGGRFHHFKNGKCACNDRW* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 695 IPR002885 -
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Mtr8g0820 937 Gene3D Tetratricopeptide repeat domain 269 346 IPR011990 GO:0005515
Mtr8g0820 937 PANTHER OS05G0586900 PROTEIN 137 215 - -
Mtr8g0820 937 PANTHER OS05G0586900 PROTEIN 217 925 - -
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Mtr8g0820 937 Gene3D Tetratricopeptide repeat domain 460 577 IPR011990 GO:0005515
Mtr8g0820 937 Gene3D Tetratricopeptide repeat domain 130 268 IPR011990 GO:0005515
Mtr8g0820 937 Gene3D Tetratricopeptide repeat domain 347 459 IPR011990 GO:0005515
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat 360 390 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat 604 629 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat 325 345 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat 704 728 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat 222 249 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat 293 318 IPR002885 -
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Mtr8g0820 937 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 137 215 - -
Mtr8g0820 937 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 217 925 - -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 531 564 IPR002885 -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 496 530 IPR002885 -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 462 494 IPR002885 -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 633 666 IPR002885 -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 667 701 IPR002885 -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 292 318 IPR002885 -
Mtr8g0820 937 TIGRFAM PPR: pentatricopeptide repeat domain 360 394 IPR002885 -
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 357 IPR002885 -
Mtr8g0820 937 Pfam DYW family of nucleic acid deaminases 845 937 IPR032867 GO:0008270
Mtr8g0820 937 Pfam E motif 747 808 IPR046848 -
Mtr8g0820 937 Gene3D Tetratricopeptide repeat domain 585 679 IPR011990 GO:0005515
Mtr8g0820 937 Gene3D Tetratricopeptide repeat domain 680 779 IPR011990 GO:0005515
Mtr8g0820 937 Pfam PPR repeat family 458 505 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat family 528 576 IPR002885 -
Mtr8g0820 937 Pfam PPR repeat family 633 676 IPR002885 -
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Mtr8g0820 937 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0820 Mtr-Chr8 10187483 10191105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0820 132 937 Glycoside Hydrolase AT3G49170 30.869 3.02e-129 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0820 - - mtr:MTR_8g027810 1892.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0820 8 10187483 10191105 Mtr8g0820 8 10187483 10191105 ECH