Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0574 ATGAATTTGCAACAAGTTGGGCAGCCTAAACCATCTAATGGATATGGTCGTCGGAAATCTGAAAAAGACGCGGCATCTAAATCTGTTGCCCCTGGAAAATCAAATGCTGGCAGATTAGCTAGTACAGTGACAGGTAGTAAAGGTGGTAGTTATGAGAGTCCTTCACGTGATCGACTAGTATATTTAACAACATGCCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCCGGAATATTTCATGCTACAAATACCGAGAAAGATTTTGGAATCATTTTAAAAATGGCTTGCTTGACAAAGGATGGGTCTTCACAAGGGCAGAGCTCTGGTGCTGAATTTGTCAGCAAAGCTCCTTCTAAAACTTTAATTATACCTGGCAAAGAACTTGTACAAGTCATAGCAAAGGATGTTGCTGTTTCTACAAGTGACCTAGTCAGTGAATCTCACTATGATGTGCATCAGGAGATCATGGTTGATTCAGTAATATCTCAACCACGTCATGTTGACTTAGGGAGAGAATTACACCGATGGGTACCTGATGAAGATGTTCCACAATGCCCTGAACTTGACAATATCTTCGATGGCCCTTGGAATAGTTCTCGGGGATGGGATCAGTTTGAGACAAATAAAATGTTGTTTGGTGTAAAAAGCACATTTGATGAGGAACTCTATACAACAAAGCTTGAAAAAGGGCCTCAGATGAGAGAATTGGAGAGGCAAGCTCTAAGAATAGCAAGAGAAATTGAGGGAGAGGAAACCCAAGATCTTCATCTAGCAGAGGAAAGAGGCCTTTACCCTGATGACTTTGACATTGATGAAGAGACCAGATTCTCTTCTGTATATAGGGGTAAAGGTGTTGACGATGAATATGATGAAAATGAAGACAACTTGTTGGATTCACAAAATTCTGAAACGTTCGGTGATATATCTGATCCAGTCATAAAGAGACCAGGAAAGGTAAGTGGTGGGAAAGGCAAAAATGGAGCTCAAACGTGGTCAAATTTCTCCTTTATGTCATCTCAGTCAAAAACTGGTGGGGATTTATGCCGCTCTGATTCTTATGATCACGCTAAGCAGTTACCATCTGAACTCCCTGGCCAAAGTTACTCATTTTCAGATGGAGAAAGCAGGATTCAGGATAACTCAGTTTGTGATCTACACGGAGCCGATGGTAGCACCAAGGAAGAAAATCAGATGCAAGCTGAGGATGTACAGCTGTTGAAATTTGAGGATTTACAGCCAGCCGTCAACTTGAAGAAAGATGGCTCTGATAAAGGGGGATTATCTCCGGCTAATGCCCCCTCCTATGTCTCGTCTACTCATATTTCATCGAAGATTGATGAAAAAACTGGATCGCATGGAGAGTTGACTGGGGGTTCAGAATCTGGCAAAGCAAGTTGGGAAACAAAGTCTGTAAATTCACGTGGAAGATTAGAAACTCGTATATCATCTGGTTCAGATCGTGTAGCAGGAGTGGCAACATATTCTGGTCCCAGTCTATCACCAAGTTCTTCACTTGGTTCACTGTCTTCCGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTTAAGCTGAACCCTAATGCTAAGAGTTTCGTTCCGTCTCAAACATCTGTTAGGCCTCGCTCCCCAGTGTCTGATAGTTCCTTCTATTTCCCAGCAAATGTATCTGCTGTACCGAGTATGCCAACCATGCCAATGGGTGTTGGAGTTGGAACTTCTTTTGCCGGGCCACAACCTATCATGTATAATCCACAGGCAGCACAAATGCCATCCCAACCATATTTTCACCAGAATGGACCACAGTATGGACAACTTCATGGTCATCCGAGACAACAAGTTGTATTCATGCCCAGTTATCTACCTGAGACGCCATACAAGGGACGGAACTATTAA 1911 0.4254 MNLQQVGQPKPSNGYGRRKSEKDAASKSVAPGKSNAGRLASTVTGSKGGSYESPSRDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSGAEFVSKAPSKTLIIPGKELVQVIAKDVAVSTSDLVSESHYDVHQEIMVDSVISQPRHVDLGRELHRWVPDEDVPQCPELDNIFDGPWNSSRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPQMRELERQALRIAREIEGEETQDLHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDEYDENEDNLLDSQNSETFGDISDPVIKRPGKVSGGKGKNGAQTWSNFSFMSSQSKTGGDLCRSDSYDHAKQLPSELPGQSYSFSDGESRIQDNSVCDLHGADGSTKEENQMQAEDVQLLKFEDLQPAVNLKKDGSDKGGLSPANAPSYVSSTHISSKIDEKTGSHGELTGGSESGKASWETKSVNSRGRLETRISSGSDRVAGVATYSGPSLSPSSSLGSLSSEKSTLNPNAKEFKLNPNAKSFVPSQTSVRPRSPVSDSSFYFPANVSAVPSMPTMPMGVGVGTSFAGPQPIMYNPQAAQMPSQPYFHQNGPQYGQLHGHPRQQVVFMPSYLPETPYKGRNY* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0574 636 Pfam Ataxin 2 SM domain 56 140 IPR025852 -
Mtr8g0574 636 Pfam Ataxin-2 C-terminal region 517 528 IPR009818 -
Mtr8g0574 636 Coils Coil 239 259 - -
Mtr8g0574 636 Pfam LsmAD domain 218 287 IPR009604 -
Mtr8g0574 636 MobiDBLite consensus disorder prediction 291 332 - -
Mtr8g0574 636 MobiDBLite consensus disorder prediction 35 51 - -
Mtr8g0574 636 MobiDBLite consensus disorder prediction 460 485 - -
Mtr8g0574 636 MobiDBLite consensus disorder prediction 501 527 - -
Mtr8g0574 636 MobiDBLite consensus disorder prediction 422 527 - -
Mtr8g0574 636 SMART LsmAD_2 218 288 IPR009604 -
Mtr8g0574 636 MobiDBLite consensus disorder prediction 1 54 - -
Mtr8g0574 636 PANTHER ATAXIN 2-RELATED 4 625 IPR045117 GO:0003723
Mtr8g0574 636 PANTHER ATAXIN-2 HOMOLOG 4 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0574 Mtr-Chr8 6852759 6862538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0574 - - mtr:MTR_8g019560 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0574 8 6852759 6862538 Mtr8g0574 8 6852759 6862538 ECH