Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0548 ATGGCTTCTCATTTACTCAATCACTCCAAAAAGTTAAGAAATGCTTCGAGTTTGTTACACCACGACCGTGCTCTTTTGCTTCGTATGTTTTGCAGCGATGTTCAGCCCAGAAATCCTGATGTGTGGAAAACTCAATTACAAGAGCGTGAGTCTTCAGCGAGAAATCATGTCTCTGAATCATCCCCAAACTTTACTAAACTTTCATTTGGTGTACAGAAGAGAAACATGTCCACCATGAAAAGGGGTTACATGAGGGAGTCGTTGTTGAATAGAGAGATTTCACAAAATTCACAGGTTCTGTCTAGGAGAAGCTATTCATCAGCTTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCGCCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACAGTTGAAATGGAGTGCATGGAGGAAGGTTTTCTGGCCAAAATAGTACGTAAGGAAGGCGAAAAAGAAATTCAAGTTGGTGAGGTAATTGCCATAACTGTTGAAGAGGAGGCGGACATTGCCAAATTTAAAGACTATCAACCTTCAGCATCTGAATCTAGTGCCCCCCCTGCCAAAGAAACACCTGCCCCACCTCCCCCAAAGAAAGAGGTGGCAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCCAAACCTAGTGCACCACCTTCATCTGGAGATCGCATATTTGCTAGTCCCCTTGCTAGAAAGTTAGCTGAAGAGAAAAATGTGAATCTCTCCAGCATCAAAGGAACAGGACCTGATGGGCTCATTGTCAAGGGTGACATTGATGATTACTTGGCTTCTGGTGCTAAAGAAGTTTCAGCACCTTCAAAGGCCAAGCCTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCACAAATAAGGAAGATCACGGCTTCACGTTTGTTGCTATCAAAACAAACTATTCCTCATTACTATTTGACAGTAGATACATGTGTTGACAAACTCATGAGTTTGCGTACCCAACTCAATTCACTACAGGAAGCTTCTGGTGGTGCCCGTATATCAGTAAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAGTGTAACAGTTCATGGACAAATGACTATATTCGCCAGTATCATAATGTGAATATCAATGTTGCCGTGCAGACTGATCATGGACTCTTTGTTCCAGTCGTCAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGTGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTACGAGGGAGGTACATTTACGGTGTCTAACTTGGGAGGGCCATTTGGAGTCAAACAGTTCTGTGCCATTGTCAATCCTCCTCAATCAGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGAGTCGTTCCAGGTTCAGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATAGCCGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGGGCGATTGGTGCCGAATGGTTGAAAGCATTCAAAGGCTATATTGAGAATCCAGAAACCATGTTGTTGTAA 1632 0.4412 MASHLLNHSKKLRNASSLLHHDRALLLRMFCSDVQPRNPDVWKTQLQERESSARNHVSESSPNFTKLSFGVQKRNMSTMKRGYMRESLLNREISQNSQVLSRRSYSSASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGFLAKIVRKEGEKEIQVGEVIAITVEEEADIAKFKDYQPSASESSAPPAKETPAPPPPKKEVAEEPAREPEPKVSKPSAPPSSGDRIFASPLARKLAEEKNVNLSSIKGTGPDGLIVKGDIDDYLASGAKEVSAPSKAKPAADAALDYTDIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTQLNSLQEASGGARISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNINVAVQTDHGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIVNPPQSGILAVGSAERRVVPGSGAEEFKFASFIAVTLSCDHRVIDGAIGAEWLKAFKGYIENPETMLL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0548 543 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 139 168 IPR003016 -
Mtr8g0548 543 SUPERFAMILY CoA-dependent acyltransferases 312 543 - -
Mtr8g0548 543 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 246 291 IPR036625 GO:0016746
Mtr8g0548 543 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 312 543 IPR001078 GO:0016746
Mtr8g0548 543 SUPERFAMILY Single hybrid motif 113 208 IPR011053 -
Mtr8g0548 543 ProSiteProfiles Biotinyl/lipoyl domain profile. 114 190 IPR000089 -
Mtr8g0548 543 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 45 543 - -
Mtr8g0548 543 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 116 543 IPR006257 GO:0004742|GO:0006090|GO:0045254
Mtr8g0548 543 Pfam Biotin-requiring enzyme 116 188 IPR000089 -
Mtr8g0548 543 Gene3D - 109 215 - -
Mtr8g0548 543 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 45 543 - -
Mtr8g0548 543 MobiDBLite consensus disorder prediction 202 252 - -
Mtr8g0548 543 Gene3D - 297 541 IPR023213 -
Mtr8g0548 543 MobiDBLite consensus disorder prediction 105 125 - -
Mtr8g0548 543 CDD lipoyl_domain 115 188 - -
Mtr8g0548 543 MobiDBLite consensus disorder prediction 222 237 - -
Mtr8g0548 543 Gene3D - 241 294 IPR036625 GO:0016746
Mtr8g0548 543 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 253 290 IPR004167 GO:0016746
Mtr8g0548 543 Pfam e3 binding domain 252 286 IPR004167 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0548 Mtr-Chr8 6519694 6527224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0548 2 543 Acyl Lipid Metabolism Gene Families AT1G54220 68.257 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0548 K00627 - gmx:100778218 839.336