Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0546 ATGTTTGGCATCTTAAACAACAAGGGCCAAAAAATCAAGGGAACTGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAATGCCATAACTTCCGTCGGTAAAGGCGGTGTTATTAACACCGCCGGAAATATCATCGGAGGTGTCACCGGCATTGTTGGCGGAGTTGTTGACACTGCCACTGCTTTCTTAGGCCGTAACGTCTCTATGCAGTTGATAAGTGCTACTAAGACTGATGCAAATGGAAAGGGTCTAGTTGGAAAAGAAACATTTTTGAGCAAACATCTACCACAGTTACCAACTTTGGGAGCAAGACAAGATGCATTCAGTGTTTTCTTTGAATATGATGCTAATTTTGGAATACCTGGAGCATTTTACATAAGAAATTATACACAAGCTGAATTCTTCCTTGTTAGTGTGACTCTTGAAGATATTCCTAACCGTGAATCTGTTCAGTTTATTTGTAACTCATGGGTTTACAACTTCAAAAGTTACAAAAAAGATCGCATCTTCTTCACCAATGATACGTATCTTCCAAGTCAAACACCAGCTCCATTAAATCATTATAGAGAAGAAGAGTTGCAGACTCTAAGAGGAGATGGAACTGGAGAGCGCAAAGAAGCGGATAGAGTTTATGATTATGATATTTATAATGATTTGGGAAATCCAGATGGTGGTGACGCACTTGTCCGTCCTGTCCTTGGGGGATCAAGCACCTATCCCTACCCTCGCAGGGTTAGAAGTGGTAGAAAACCAACCAGAAAAGATCCTAAGAGTGAGAAACCGGGTGTGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGACTTCCTTATGTATGGAATAAAATCACTGTCTCAAAATGTCATACCATTGTTTAAATCTGTGATTTTTGACCTCAATTTCACACCAAATGAGTTCGATAGCTTCGATGAAGTACGTGGACTTTTCGAAGGTGGGATTAAGCTTCCTACAGATATACTTAGTCAAATTAGTCCCTTACCGGCCCTTAAGGAAATCTTTCGCACTGACGGTGAACAAGTCCTCAAGTTTCCACCTCCTCATGTAATCAAAGTTAGCAAGTCTGCATGGATGACAGATGAAGAATTTGGAAGAGAGATGGTTGCTGGTGTAAATCCTAATGTGATTCGCCTTCTTCAAGAGTTTCCACCAAAAAGCACACTAGATACCACTGTCTATGGTGATCAAAACAGTACAATAACAAAAGAACACTTAGCGACTAACCTTGGTGATATCACAGTTGAAGAGGCACTCAATGGAAAGAAATTATTCCTCTTAGATTACCATGATGCATTCATGCCATATTTGGAGAGGATAAACATAAATGCAAAGGCTTATGCCACAAGAACAATCTTGTTCTTGAAAGATGATGGGACTTTGAAGCCAATAGCAATTGAATTAAGTTTGCCACACTCAAATGGGGTCCAATATGGTTCTGAAAGCAAAGTATTCTTGCCTGCTGACGAAGGCGTTGAAAGTACAATTTGGCTATTGGCAAAGGCTCATGTCATTGTAAATGATTCATGCTATCATCAACTCATCAGCCATTGGTTGAATACTCATGCAGTTGTTGAACCATTCATCATAGCAACAAATAGGCATCTAAGTGTTCTTCACCCAATTAATAAACTTTTATTTCCTCATTTCCGTGACACAATAAATATCAATGGACTTGCTCGACAATCTCTAATCAATGCTGGTGGCATTATAGAGCAAACATTTTTGCCAGGACCAAATTCAGTCGAGATTTCTTCAATAGTTTACAGGGATTGGGTTTTCACCGACCAAGCATTACCGGCTGATCTTATCAAGAGAGGACTAGCTGTTGAGGACCCGTCTTCCCCCCATGGACTTCGTCTTGCGTTAGAAGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGGCATGGGTTCAAGACTATGTCTCCTTATATTATCCAACAGATGAAGTAGTGCAAAAGGACACTGAACTACAAACTTGGTGGAAGGAAGCTGTAGAAAAGGGTCATGGTGACTTGAAAGACAAGCCATGGTGGCCTAAGATGCAAACTGTTGGAGACTTGGTTCAATCTTGCTCCATTATCATATGGACTGCTTCAGCTCTTCATGCAGCAGTTAACTTTGGACAGTATCCTTATGGAGGATATATCCTGAACCGTCCAACTCTTAGTAGAAGATTTATTCCGGAGCAAGGAACTCCGGAGTATGATGAGATGGTGAAAAGTCCTCAAAAGGCGTATTTGAGAACTATTACACCAAAGTTTCAGACCCTCATTGATCTTTCTGTGATTGAGATATTGTCAAGACATGCTTCTGATGAGGTGTATCTCGGAGAGAGGAATGACAAGTTTTGGACATCTGATACAAGGGCAGTTCAAGCCTTCCAAAAGTTTGGAAGCAAACTATCTGAAATTGAAGGGAAAATCCACGGGAGGAACAAAGATTCTAGTTTGAAAAACCGCACTGGACCAGTTGAATTGCCCTACACTTTGCTCCTTCGTTCAAGTGAAGAAGGTTTAACTTTTAGAGGAATTCCCAACAGTATCTCTATTTAG 2598 0.4038 MFGILNNKGQKIKGTVVLMPKNVLDFNAITSVGKGGVINTAGNIIGGVTGIVGGVVDTATAFLGRNVSMQLISATKTDANGKGLVGKETFLSKHLPQLPTLGARQDAFSVFFEYDANFGIPGAFYIRNYTQAEFFLVSVTLEDIPNRESVQFICNSWVYNFKSYKKDRIFFTNDTYLPSQTPAPLNHYREEELQTLRGDGTGERKEADRVYDYDIYNDLGNPDGGDALVRPVLGGSSTYPYPRRVRSGRKPTRKDPKSEKPGVIYVPRDENFGHLKSSDFLMYGIKSLSQNVIPLFKSVIFDLNFTPNEFDSFDEVRGLFEGGIKLPTDILSQISPLPALKEIFRTDGEQVLKFPPPHVIKVSKSAWMTDEEFGREMVAGVNPNVIRLLQEFPPKSTLDTTVYGDQNSTITKEHLATNLGDITVEEALNGKKLFLLDYHDAFMPYLERININAKAYATRTILFLKDDGTLKPIAIELSLPHSNGVQYGSESKVFLPADEGVESTIWLLAKAHVIVNDSCYHQLISHWLNTHAVVEPFIIATNRHLSVLHPINKLLFPHFRDTININGLARQSLINAGGIIEQTFLPGPNSVEISSIVYRDWVFTDQALPADLIKRGLAVEDPSSPHGLRLALEDYPYAVDGLEIWDAIKAWVQDYVSLYYPTDEVVQKDTELQTWWKEAVEKGHGDLKDKPWWPKMQTVGDLVQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRFIPEQGTPEYDEMVKSPQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGERNDKFWTSDTRAVQAFQKFGSKLSEIEGKIHGRNKDSSLKNRTGPVELPYTLLLRSSEEGLTFRGIPNSISI* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0546 865 CDD PLAT_LH2 11 173 IPR042057 -
Mtr8g0546 865 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Mtr8g0546 865 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Mtr8g0546 865 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Mtr8g0546 865 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Mtr8g0546 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 865 IPR013819 GO:0016702|GO:0046872
Mtr8g0546 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Mtr8g0546 865 SUPERFAMILY Lipoxigenase 177 865 IPR036226 -
Mtr8g0546 865 PANTHER LIPOXYGENASE 1 865 IPR000907 GO:0016702|GO:0046872
Mtr8g0546 865 ProSiteProfiles PLAT domain profile. 44 172 IPR001024 GO:0005515
Mtr8g0546 865 Gene3D - 276 364 IPR027433 -
Mtr8g0546 865 Gene3D - 177 275 - -
Mtr8g0546 865 Gene3D - 365 498 - -
Mtr8g0546 865 Gene3D PLAT/LH2 domain 1 176 - -
Mtr8g0546 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 176 IPR036392 GO:0005515
Mtr8g0546 865 Gene3D - 499 864 - -
Mtr8g0546 865 SMART LH2_4 10 173 IPR001024 GO:0005515
Mtr8g0546 865 Pfam PLAT/LH2 domain 77 171 IPR001024 GO:0005515
Mtr8g0546 865 MobiDBLite consensus disorder prediction 232 263 - -
Mtr8g0546 865 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 865 - -
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 142 160 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Mtr8g0546 865 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Mtr8g0546 865 Pfam Lipoxygenase 185 847 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0546 Mtr-Chr8 6492424 6496378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0546 10 865 Acyl Lipid Metabolism Gene Families AT1G55020 57.471 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0546 K15718 - gmx:547835 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3469 2 48801547 48805711 Mtr8g0546 8 6492424 6496378 PCT