Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0540 ATGAGTTCATTGGTGAAAGGTCTCTTTGATAAGCACCAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTCTTAGACATCAACGAACTCACTGCAGCTCAAAGCGCCGGTGGTGTAGTTGACAGTTTCTTCGATTTTGTTGGTGATGCTGCCGGTACTGTAGCTGACACTGCCACCTCCTTGTTCCGCCGTTCTGTGGCTCTCTGGCTGATTAGTGCTACCGTTGCTGATGGAAAAACCGGAAAAGGCAAAGTGGGAGAGAAAACGTATCTGGCAAGTGTTATTACCTCCTTGCCAACATTGGGAGATAAACAAAATGCTTTCAGTATTGAATTTGAATGGGACAATGACATGGGAACTCCAGGAGCTTTTTATATTGAGAATTATCTGCAAGGTGGTGAATTCTTCCTTGTCAGCTTGACTCTTGAAGATGTTCCAAACCATGGAACCATCAACTTTGTTTGCAACTCATGGGTTTACAACGCTAAAAATTACAAAACTAAACGCATTTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCAGCTCCTTTAGTCTACTACAGACAAGAAGAATTGAAGACTTTAAGAGGAGATGGAACTGGAGAGCGTAAGGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGATGTGGACAAGAACGCTAGTTTGGCTCGTCCTGTTGTTGGAGGATCTAGCACCCTCCCTTACCCTCGAAGAGGGAGAACCGGCAGGAAAGCAGCTCGTAAAGATCCTAAGAGTGAGAGTCGAAGTGACACTGTTTACCTCCCAAGAGATGAATCATTTGGACACACAAAGTCATCAGACTTTCTTGTTCACATACTCAAATCTGCATCTCAAAATGTCATACCTCGATTAAGATCTATAGTTACATTACAATTCCATGAGCCTGAGTTTAACACCTTTGAAGATGTGCGCTCGCTCTATGAAGGTGGAATCAGGCTTCCTACTGATATACTAAGTGAACTTAGCCCAATACCATTGTTCAAGGAACTTTTCCGAACTGATGGTGAAGCGGCACTTAAGTTTCCACCACCAAAAGTGATTCAAGTCGATCATTCTGCATGGATGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGGGTGAATCCACACATCATAAAAAAACTCTTGGAGTTTCCACCAAAGAGCAAGTTAGATACCCAACTCTTTGGTAATAATACCAGCACCATAACCAAAGAACATTTGCAGCCAAACATGGTTGGGGTCACGGTAGAACAGGCTATCCAGAATAATAAATTGTTCATACTGGATCACCACGACCCACTCTTTCCATATTTGAGGAAAATAAATGCAACCGAGACTAAGGCCTATGCTACTAGAACCATTCTTTTCTTGCAAGATGATGGAACTTTGAAGCCATTGGCCATTGAACTAAGTAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAAAGTTTACTTGCCTGCAAGTGAAGGTGTTGAAGCTTCAATTTGGCTCCTTGCCAAGGCTTACGTAATTGTAAATGATTCATGTTATCACCAACTTGTTAGCCATTGGTTGAACACTCATGCTGTAGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTAAGTGTGGTTCACCCTATTCATAAACTTCTGCTTCCACATTATCGTGACACGATGAACATAAATGCACTAGCACGAAATGTGTTGGTCAATGCCGAGGGTATTATCGAGTCAACTTTCTTGTGGGGAAAGTATGCTTTGGAAATGTCTTCTGTCGTTTACAAGGATTGGGTTTTCACTGAGCAAGGCCTACCTAATGATCTAATCAAAAGAGGAGTGGCCGTTGAGGACCCTACTTCAGCATATGGTCTTCGACTTCTAATAGAGGACTACCCTTATGCTTCAGATGGACTAGAAATATGGGCTGCTATTAAATCATGGGTTGATGAATATGTCAATTTCTACTACAAGTCAGATGCATCTATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTCGGTCATGGTGACTTGAAGAATGCTACATGGTGGTTTAAGATGCAAACTCGTGAGGAGTTGATTGAAGCTTGCACCACCCTCATATGGATTGCTTCAGCACTTCATGCAGCAGTTAATTTTGGACAATATCCGTATGGAGGATATATCGTTAACCGACCAACTAAAAGTAGAAGATTCATGCCTGAGCAGGGATCCCCTGAGTATGATGAGCTTGCTAAGGACTACCAGAAGTCTTATCTGAGGACAATAACACCCAAGAATGATACTCTTACTGACTTGACCATTATAGAAGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTTGGAGAGAGAATTGAAGGTGATCTCTGGACTTCTGATTCACAGCCAAAAGAGTCCTTTAAGAGGTTTGGAAAGAAGTTGGCTGAAATTGAGCAAAAACTCATTCAAAGGAACAATGATGAGACACTGAGGAATCGTAACGGACCAGTGAAGATGCCTTACACTCTGCTTTATCCTTCTAGTGAGGAAGGATTGACTTGCAGAGGCATTCCCAACAGTGTCTCTATCTAA 2613 0.4221 MSSLVKGLFDKHQKVKGTVVLMQKNVLDINELTAAQSAGGVVDSFFDFVGDAAGTVADTATSLFRRSVALWLISATVADGKTGKGKVGEKTYLASVITSLPTLGDKQNAFSIEFEWDNDMGTPGAFYIENYLQGGEFFLVSLTLEDVPNHGTINFVCNSWVYNAKNYKTKRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGDVDKNASLARPVVGGSSTLPYPRRGRTGRKAARKDPKSESRSDTVYLPRDESFGHTKSSDFLVHILKSASQNVIPRLRSIVTLQFHEPEFNTFEDVRSLYEGGIRLPTDILSELSPIPLFKELFRTDGEAALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKKLLEFPPKSKLDTQLFGNNTSTITKEHLQPNMVGVTVEQAIQNNKLFILDHHDPLFPYLRKINATETKAYATRTILFLQDDGTLKPLAIELSRPHPQGDSFGPVSKVYLPASEGVEASIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGKYALEMSSVVYKDWVFTEQGLPNDLIKRGVAVEDPTSAYGLRLLIEDYPYASDGLEIWAAIKSWVDEYVNFYYKSDASIAQDSELQAFWKELVEVGHGDLKNATWWFKMQTREELIEACTTLIWIASALHAAVNFGQYPYGGYIVNRPTKSRRFMPEQGSPEYDELAKDYQKSYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDLWTSDSQPKESFKRFGKKLAEIEQKLIQRNNDETLRNRNGPVKMPYTLLYPSSEEGLTCRGIPNSVSI* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0540 870 PANTHER LIPOXYGENASE 8 870 IPR000907 GO:0016702|GO:0046872
Mtr8g0540 870 Gene3D - 280 368 IPR027433 -
Mtr8g0540 870 Pfam PLAT/LH2 domain 82 174 IPR001024 GO:0005515
Mtr8g0540 870 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 8 870 - -
Mtr8g0540 870 MobiDBLite consensus disorder prediction 236 268 - -
Mtr8g0540 870 ProSitePatterns Lipoxygenases iron-binding region signature 2. 552 562 IPR020834 GO:0016702|GO:0046872
Mtr8g0540 870 Pfam Lipoxygenase 188 853 IPR013819 GO:0016702|GO:0046872
Mtr8g0540 870 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 179 IPR036392 GO:0005515
Mtr8g0540 870 SUPERFAMILY Lipoxigenase 180 870 IPR036226 -
Mtr8g0540 870 Gene3D - 369 502 - -
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 145 163 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 243 262 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 310 331 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 355 371 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 394 413 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 460 484 IPR001246 GO:0016491
Mtr8g0540 870 PRINTS Plant lipoxygenase signature 782 796 IPR001246 GO:0016491
Mtr8g0540 870 ProSiteProfiles PLAT domain profile. 48 175 IPR001024 GO:0005515
Mtr8g0540 870 Gene3D PLAT/LH2 domain 4 179 - -
Mtr8g0540 870 ProSitePatterns Lipoxygenases iron-binding region signature 1. 525 539 IPR020833 GO:0016702|GO:0046872
Mtr8g0540 870 CDD PLAT_LH2 14 176 IPR042057 -
Mtr8g0540 870 Gene3D - 180 279 - -
Mtr8g0540 870 SMART LH2_4 13 176 IPR001024 GO:0005515
Mtr8g0540 870 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 870 IPR013819 GO:0016702|GO:0046872
Mtr8g0540 870 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Mtr8g0540 870 PRINTS Lipoxygenase signature 525 542 IPR013819 GO:0016702|GO:0046872
Mtr8g0540 870 PRINTS Lipoxygenase signature 545 565 IPR013819 GO:0016702|GO:0046872
Mtr8g0540 870 Gene3D - 503 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0540 Mtr-Chr8 6398386 6402437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0540 13 870 Acyl Lipid Metabolism Gene Families AT1G55020 55.811 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0540 K15718 - gmx:100816880 1409.82