Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0538 ATGTCTAGCATTATCTTTAACAGAGGCCAAAAGGTGAAGGGGACAGTGATATTGATGCATAAGAATGTATTGGATATCAACGAAATCACTGCAGCTCAAAGTGCCACTGGTTTAATCAAAGGTGGATTCAATGTTGTTGGTGATATCACTAGCTCTATAATTGATACCTACACTTCCTCCTTTGGCCGTTCAGTGGCTCTCAGGTTGATTAGTGCTACCAATGTTGATGGAAGTGGAAAAGGTAAAGTGGGAAAAAAAACATATTTAGAAGGTCTTGTTACCTCCATACCAATTTTGGGAGCAGGGCAATCTGCATTTGATGTTCATTTTGAATGGGACAGTGAGATGGGAATTCCAGGAGCATTTTATATTGAAAATTTCATGCTAGGAGAATTCTTCCTTGTAAGTTTGACGCTTGAAGATATTCCCATCCATGGAACCATCAACTTTGTTTGCAACTCATGGATTTACAATGCTAAAAAGTATAAAACGAAACGCATCTTCTTTACGAACAAGACGTACCTTCCAAGCGAAACACCAGCTCCATTAGTCTACTACAGACAAGAAGAATTGAAGACTTTAAGAGGAGATGGAACGGGTGAGCGCAAAGAATCGGATAGGATCTATGACTACGATGTTTACAATGACTTGGGTGATCCTGACAAGAAAGAAAGCTTGGCTCGTCCCGTTGTTGGAGGATCCAATAACTTGCCTTACCCTCGAAGGGGGAGAACCGGCAGGAAACATGCTAAAAAAGATGATAAAAGTGAGAGTCGGAGCGACTTTGTTTACATTCCAAGAGATGAATCATTTGGCCACTTGAAGTCTTCAGACTTTCTTGTTTATATACTGAAATCAGCATCTCAAAATGTTATACCTCAATTACGATCTGCACTTACATTACAATTCAATCAGCCAGAGTTTAACACTTTTGAAGATGTCCGTTCATTATATCATGGTGGAATTGAATTACCTACTAATGCACTTAGCAAAATTAGCCCCATACCAGTGTTCCAGGAACTCCTCAGAACTGATGGTGAATCGGCCCTAAAGTTTCCACGACCTAAAGTGGTTGAAGTTAATCAGTCTGCATGGATGACTGATGGAGAATTTGCAAGGGAGATGATTGCTGGTGTGAATCCACACATAATCAAAAGACTTCAGGAGTTCCCACCAAAGAGCAAGCTAGATACCCAACTCTACGGTGATAATACGAGCACAATAACCGAAGAACAGTTACAGCTAAACATGGATGGGGTCACTGTAGAAGAAGCTATCCAAAACAACAGGCTTTACATACTTGATCACCATGACCCAATATTTCCATATTTGAGGAAAATAAACTCAACTGATACAAAGGCATATGCTACGAGAACCTTCATTTTCTTACAAAATGATGGAACTTTGAAGCCATTGGCCATTGAGCTAAGTAAGCCACATCCTCAAGAAGATAGTTATGGTCCTGTTAGTAATGTTTACTTGCCTGCAAGTGAAGGTGTTGAAGCTTCTATTTGGCTACTTGCCAAAGCTTACGTTGTTGTAAATGACTCCTGTTTTCATCAACTTGTCAGCCACTGGTTGAACACTCATGCTGTTGTTGAGCCATTCATCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCACAAACTTCTACTTCCACATTATCGTGACACAATGAACATTAATGCACTTGCAAGGAATGTCTTGGTTAATGCAGAGGGTATTATAGAATCGACATTCTTGATGGGACGTTATTCTTTAGAATTGTCTGCTCTATTATATAAGGATTGGGTTTTCATAGAGCACGGTCTTCCTAATGATTTACTGAAAAGAGGAGTGGCTGTTGAGGATCCAACTTCCCCACATGGAATTCGCCTTCTGATAGAGGACTACCCTTATGCTGCTGATGGACTAGAGATATGGGATGCTATCAAGTCATGGGTTGAAGAATATGTGAGTTTCTACTACACGTCAGATGCTGCTGTTGCGCAAGATTCTGAACTGCAAGCATTTTGGAGAGAAGTTGTAGAGGTGGGTCATGGTGATTTGAAGAATGCTACATGGTGGTTTAAGATGCAAACTTGTACAGAGTTGATTGAAGCTTGCACTATCCTCATATGGATTGCTTCAGCACATCATGCAGCTGTTAATTTTGGTCAATATCCATATGGAGGATATATACTTAACCGACCAACTAAAAGCCGGAGACACATGCCTGAGAAAGGGTCTGCTGAGTATGCCGAGCTTTCTAAGAACTTTCAAAAGGTGTATCTAAGGACAATCACACCAAAAAATGATACCCTCACTGACCTTACGATCTTAGAGGTCTTATCAAGGCATGCTTCTGATGAGCAATACCTTGGACAGAGAAATGAAGGCGAGGTTTGGACTTCAGATTCACAGCCATTAGAAGCTTTCAAGAGGTTTGGAAGGAAGTTGGCTGAAATTGAGGTAAAGCTCATTGAAAGGAACAATGATGAGTCATTGAGAAACCGATACGGGCCTGTGAATATGCCATACACTCTGCTTTATCCTTCTAGTGAGAAAGGATTGACTTGCAGAGGCATTCCTAATAGTATCTCCATCTAA 2598 0.4061 MSSIIFNRGQKVKGTVILMHKNVLDINEITAAQSATGLIKGGFNVVGDITSSIIDTYTSSFGRSVALRLISATNVDGSGKGKVGKKTYLEGLVTSIPILGAGQSAFDVHFEWDSEMGIPGAFYIENFMLGEFFLVSLTLEDIPIHGTINFVCNSWIYNAKKYKTKRIFFTNKTYLPSETPAPLVYYRQEELKTLRGDGTGERKESDRIYDYDVYNDLGDPDKKESLARPVVGGSNNLPYPRRGRTGRKHAKKDDKSESRSDFVYIPRDESFGHLKSSDFLVYILKSASQNVIPQLRSALTLQFNQPEFNTFEDVRSLYHGGIELPTNALSKISPIPVFQELLRTDGESALKFPRPKVVEVNQSAWMTDGEFAREMIAGVNPHIIKRLQEFPPKSKLDTQLYGDNTSTITEEQLQLNMDGVTVEEAIQNNRLYILDHHDPIFPYLRKINSTDTKAYATRTFIFLQNDGTLKPLAIELSKPHPQEDSYGPVSNVYLPASEGVEASIWLLAKAYVVVNDSCFHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLMGRYSLELSALLYKDWVFIEHGLPNDLLKRGVAVEDPTSPHGIRLLIEDYPYAADGLEIWDAIKSWVEEYVSFYYTSDAAVAQDSELQAFWREVVEVGHGDLKNATWWFKMQTCTELIEACTILIWIASAHHAAVNFGQYPYGGYILNRPTKSRRHMPEKGSAEYAELSKNFQKVYLRTITPKNDTLTDLTILEVLSRHASDEQYLGQRNEGEVWTSDSQPLEAFKRFGRKLAEIEVKLIERNNDESLRNRYGPVNMPYTLLYPSSEKGLTCRGIPNSISI* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0538 865 SUPERFAMILY Lipoxigenase 175 865 IPR036226 -
Mtr8g0538 865 SMART LH2_4 10 171 IPR001024 GO:0005515
Mtr8g0538 865 Gene3D - 175 274 - -
Mtr8g0538 865 Gene3D - 498 864 - -
Mtr8g0538 865 CDD PLAT_LH2 11 171 IPR042057 -
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 140 158 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 166 187 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 205 221 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 455 479 IPR001246 GO:0016491
Mtr8g0538 865 PRINTS Plant lipoxygenase signature 777 791 IPR001246 GO:0016491
Mtr8g0538 865 PANTHER LIPOXYGENASE 1 865 IPR000907 GO:0016702|GO:0046872
Mtr8g0538 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 174 IPR036392 GO:0005515
Mtr8g0538 865 Pfam Lipoxygenase 183 848 IPR013819 GO:0016702|GO:0046872
Mtr8g0538 865 ProSiteProfiles PLAT domain profile. 45 170 IPR001024 GO:0005515
Mtr8g0538 865 MobiDBLite consensus disorder prediction 220 259 - -
Mtr8g0538 865 Pfam PLAT/LH2 domain 73 169 IPR001024 GO:0005515
Mtr8g0538 865 Gene3D PLAT/LH2 domain 2 174 - -
Mtr8g0538 865 Gene3D - 275 363 IPR027433 -
Mtr8g0538 865 ProSitePatterns Lipoxygenases iron-binding region signature 1. 520 534 IPR020833 GO:0016702|GO:0046872
Mtr8g0538 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 547 557 IPR020834 GO:0016702|GO:0046872
Mtr8g0538 865 Gene3D - 364 497 - -
Mtr8g0538 865 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
Mtr8g0538 865 PRINTS Lipoxygenase signature 520 537 IPR013819 GO:0016702|GO:0046872
Mtr8g0538 865 PRINTS Lipoxygenase signature 540 560 IPR013819 GO:0016702|GO:0046872
Mtr8g0538 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 173 865 IPR013819 GO:0016702|GO:0046872
Mtr8g0538 865 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 1 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0538 Mtr-Chr8 6367251 6379350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0538 10 865 Acyl Lipid Metabolism Gene Families AT1G55020 54.661 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0538 K15718 - gmx:100816880 1412.9