Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0534 ATGTTTACAAATCCATTTCACAGAAGCCAAAAGGTGAAGGGGACAGTGATATTGATGCATAGGAATGTGTTGGATATCAACGCCCTCACCGCTGGTTTAAATGTCACAGGTGGATTCAAGGTTCTTGGTAATCTCACTTGCTCTATAATTGACACCTACGCTTCAATCTTGTGCTCTTCCGTGGCTCTCAGGTTGATTAGTGCTACTAGTGCTGATGAAAGTGGAAAAGGTAAAGTGGGAAAGAGATCGTTTCTTGAAGGTTTTGTTACCTCTGCACCAATTCTAGGAGCTGGACAGTCTGCATACAAAGTTCATTTTGAATGGGATAGTGAGATGGGAATTCCAGGAGCATTTTATATTGAGAATTTCATGCTAGGAGAATTCTTTCTTGTAAGTTTAACACTTGAAGATATTCCTAACCATGGAACCATCAACTTTGTTTGCAACTCATGGATTTACAATTGTCGAAAGTACAAAACTGAACGCATTTTCTTTGCCAACAAGACATATCTTCCAAGTGAAACACCACCTCCATTAGTCTACTATAGACAAGAAGAGTTGAACACTTTAAGAGGAGATGGAACAGGAGAGCGTAAAGAATGGGAAAGGATCTATGACTACGATGTCTACAATGATGTGGGTGATCCTGACAAGAAAGCAAGCTTGGCTCGTCCCGTTATTGGAGGATCCAACACCTTGCCTTACCCTCGAAGAGGGAGAACCGGCAGGAAACCAGCTAAGAAAGATCCTAAAAGTGAGAGACGGAGCGAGTATATTTATCTTCCAAGAGATGAATCATTTGGTCACTTGAAGTCTTCAGATTTTCTTGTTTACATACTCAAATCAGTATCTCAAAATGTCATACCTCAATTACAATCTGCAATTACATTACAATTCAATAAGCCAGAATTTAACAGCTTTGATGATGTGCGATCATTTTATGATGGTGGGATTAAATTACCTACTAGTACACTTAGCAAACTTAGCCCTATACCATTTTTCAAGGAACTCTTCCGAACTGATGGTGAATCGGCCCTAAAGTTTCCACCACCTAAAGTCATTAAAGTGAATCAATCTGGATGGATGACTGACGAAGAATTTACAAGAGAGATGATTGCTGGTGTAAATCCACACATCATCAAAAGAATTCAGGAATTTCCACCAAAGAGCAAGCTAGATAGGCAACTCTACGGTGATAATACCAGCACAATAACCAAAGAACAGCTTCAACAAAACATGGGTGGCATCACAGTTGAACAAGCTATCCAAACCAACAAATTGTACATACTTGATTACCACGACTCGTTATATCCATATCTGAGGAAAATAAATGCAGCTGATACAAAGGCATATGCTACGAGAACCTTCCTTTTCTTACAAAATGATGGAACTTTGAAGCCGTTGGCCATTGAGCTAAGTAGCCCACATCCTCAGGCTGATAGCTTTGGTCCTGTTAGTGATATTTACTTGCCTGCAAGTGAAGGTGTTGAAGCTTCTATTTGGCTCCTTGCCAAGGCATACGTTGTTGTAAACGACTCTTGCCATCACCAACTCATCAGCCATTGGTTAAACACTCATGCTGTTGTTGAGCCATTCATCATAGCAACAAATAGGCATCTTAGTGTGGTTCATCCTATTCATAAGCTTTTACTTCCGCACTATCGTGACACAATGAACATTAATGCACTTGCAAGGAATGTTTTGGTCAATGCAGAGGGTGTTATTGAGAAGACGTTCTTGATGGGAAGTTATTCTCTAGAGTTGTCTGCTGTATTATATAAGGATTGGAATTTTAAAGAGCAAGGTTTGCCTAATGATCTACTCAAAAGAGGAGTGGCTGTTAAGGATCCAAGTTCCCCACACGGCCTTCGCCTTCTGATAGAGGACTACCCTTATGCTGCTGATGGATTAGAGATATGGGCTGTTATTAAGTCATGGGTTGAAGAATATGTGAATTTCTACTACAAGTCAGATGCAAATATTGGACAAGATTCTGAACTCCAAGCATTTTGGAAAGAACTTGTAGAGGTTGGTCACGGTGACTTGAAAAATGCTAAATGGTGGGTTAAGATGCAAACTCGCACAGAGTTGATTGACTCTTGCACTACCCTCATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAATATCCGTACGGTGGTTACATTCTTAACCGACCAACTAAAAGCAGAAGATTAATGCCTAAGAAAGGATCCCCCGAGTATGATGAGCTTTCTAAGAACTATCAAAAGGCGTTTTTGAGAACAATCACACCAAAAGATGACACACTAACTGACTTGACCATTATAGAGGTCTTGTCAAGACATGCTTCTGATGAACAATACCTTGGACAGAGAATTGAAGGTGATCTTTGGACTTCTGATTCACAACCATTAGAGGCTTTCAAGAGATTCGGAACAAAGTTGGCTGAAATTGAACAAAAACTCACTCAAAGGAACAATGATGAGACTCTAAGGAATCGATATGGACCAGTGAAGATGCCGTATACTTTGCTTTATCCTTCTAGTGAGGAAGGATTGACTTGCAGAGGCATTCCTAACAGTATCTCCATCTAA 2586 0.4018 MFTNPFHRSQKVKGTVILMHRNVLDINALTAGLNVTGGFKVLGNLTCSIIDTYASILCSSVALRLISATSADESGKGKVGKRSFLEGFVTSAPILGAGQSAYKVHFEWDSEMGIPGAFYIENFMLGEFFLVSLTLEDIPNHGTINFVCNSWIYNCRKYKTERIFFANKTYLPSETPPPLVYYRQEELNTLRGDGTGERKEWERIYDYDVYNDVGDPDKKASLARPVIGGSNTLPYPRRGRTGRKPAKKDPKSERRSEYIYLPRDESFGHLKSSDFLVYILKSVSQNVIPQLQSAITLQFNKPEFNSFDDVRSFYDGGIKLPTSTLSKLSPIPFFKELFRTDGESALKFPPPKVIKVNQSGWMTDEEFTREMIAGVNPHIIKRIQEFPPKSKLDRQLYGDNTSTITKEQLQQNMGGITVEQAIQTNKLYILDYHDSLYPYLRKINAADTKAYATRTFLFLQNDGTLKPLAIELSSPHPQADSFGPVSDIYLPASEGVEASIWLLAKAYVVVNDSCHHQLISHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGVIEKTFLMGSYSLELSAVLYKDWNFKEQGLPNDLLKRGVAVKDPSSPHGLRLLIEDYPYAADGLEIWAVIKSWVEEYVNFYYKSDANIGQDSELQAFWKELVEVGHGDLKNAKWWVKMQTRTELIDSCTTLIWIASALHAAVNFGQYPYGGYILNRPTKSRRLMPKKGSPEYDELSKNYQKAFLRTITPKDDTLTDLTIIEVLSRHASDEQYLGQRIEGDLWTSDSQPLEAFKRFGTKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0534 861 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 1 861 - -
Mtr8g0534 861 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Mtr8g0534 861 SMART LH2_4 10 167 IPR001024 GO:0005515
Mtr8g0534 861 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Mtr8g0534 861 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Mtr8g0534 861 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Mtr8g0534 861 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
Mtr8g0534 861 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 861 IPR013819 GO:0016702|GO:0046872
Mtr8g0534 861 Gene3D - 360 493 - -
Mtr8g0534 861 PANTHER LIPOXYGENASE 1 861 IPR000907 GO:0016702|GO:0046872
Mtr8g0534 861 Gene3D - 271 359 IPR027433 -
Mtr8g0534 861 Gene3D - 494 860 - -
Mtr8g0534 861 Gene3D PLAT/LH2 domain 2 170 - -
Mtr8g0534 861 SUPERFAMILY Lipoxigenase 171 861 IPR036226 -
Mtr8g0534 861 CDD PLAT_LH2 11 167 IPR042057 -
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 301 322 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 346 362 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 385 404 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Mtr8g0534 861 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Mtr8g0534 861 Gene3D - 171 270 - -
Mtr8g0534 861 Pfam PLAT/LH2 domain 74 165 IPR001024 GO:0005515
Mtr8g0534 861 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 170 IPR036392 GO:0005515
Mtr8g0534 861 MobiDBLite consensus disorder prediction 221 255 - -
Mtr8g0534 861 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
Mtr8g0534 861 Pfam Lipoxygenase 179 844 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0534 Mtr-Chr8 6309678 6314369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0534 9 861 Acyl Lipid Metabolism Gene Families AT1G55020 54.913 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0534 K15718 - gmx:100816880 1422.14