Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0533 ATGTCTTTCCTATTTGGGAATGATAAGATCAAAGGCACATTGGTGCTGATGCAGAAGAATGTCTTGGACATCAACAGCTTAACTGATCCTACGAAGATTATCGATGGAGCCTTAGATGGGTTTGGATCGATTTTTGATACACTTACTTCCTTTCTGGGTCGATCGATTTGTCTCCAGTTAATTAGCTCTACTAAAATTGGGTTAACTGGGGAAGGGAAACTTGGAAAAGAAGCTTATTTAAAAGAGGCAATTAACAATTTGCCAACATTGGGAGATAAACAAACAGCTTTCAGCATTGAATTTGAATATGATAGCAACTTTGGAATTCCTGGAGCATTCAAAATTAAGAACTTTATGTCAACTGAGTTCCTCCTTGTGAGTTTGACTCTTGATGATATCCCAAACGTTGGAACCATTCACTTTGTTTGCAACTCGTGGGTTTACAATGCGAAAAACTACCTAACTGATCGTATTTTCTTCGCCAACAATACTTTTCTACCAAGTGAAACACCTGCTCCACTTGTCTACTATAGACAATTAGAGTTGAAGACTTTAAGAGGAGATGGAACGGGGGAGCGCAAAGAATGGGACAGAGTTTATGATTATGATGTTTACAATGATTTGGGTGACCCCGACAAGGGTCAAAGCTACGCTCGTCCAGTTTTGGGAGGATCTAGCAGCCTTCCTTATCCTCGTAGGGGAAGAACGGGCAGAAAACCAACAGCAACAGATCCTAACAGTGAGAGCAGGAGCTCTAGTGTGTATATTCCAAGAGATGAAGCTTTCGGCCACTTGAAATCCTCAGACTTTCTTGTTTATGGACTTAAGTCTGTTTCTCAAGATGTAATTCCATTGATACAATCTGTATTTGACACGAACTTCACACCGAATGAATTTGATAGCTTTGATGATGTGCTTGATCTATATGAAGGAGGAATTAAGCTACCAACAGATATACTTAGCCAAATTAGTCCTTTACCAGTGTTATCAGAAATCTTTAGAACTGATGGTGAACAATTCCTCAAGTTTCCTACACCTAAAGTAATTCAAGTGAGTAAGTCTGCATGGATGACTGATGATGAATTTGGAAGAGAGATTCTTGCTGGTGTAAATCCTGGCTTAATTCGCAGCCTCCAAGAGTTTCCTCCAAAAAGTAAGCTAGATAGTGCAGTCTATGGTGATCATACTAGCACAATAACCAGAGAGCACATACAGCTTAACTTAGACGGTCTCACTGTTGATGAGGCTATACAAAACAAAAAATTGTTCTTGCTAGAACACCATGACACAATAATTCCATATCTAAGGCTTATAAACTCAACTTCCACAAAGGCCTATGCTTCAAGAACCGTCCTTTTCTTGAAAAGTGATGGAACTTTAAAGCCTTTGGCCATTGAGTTAAGTCTTCCACATCCTCAAGGAGATCAATTTGGTGTTGTTAGTAACGTCTACTTGCCTGCAATTGAAGGTGTTGAAGCTACGGTTTGGCTACTTGCCAAGGCTTATGTTATAGTAAATGACTCATGCTTTCACCAACTTGTCAGCCACTGGTTAAATACTCATGCAGTTGTTGAACCATTTGTTATAGCAACAAACAGACAACTTAGTGTGCTTCATCCTATTTATAAACTATTACATCCACATTATCGCGATACTATGAATATAAATGCACTTGCTAGATCATCCTTAGTCAATGCAGATGGTATTATTGAAAAGACATTCTTGTGGGGAGGGTATGCTATGGAGATATCTTCAAAAGTTTATAAGGATTGGGTTTTTACAGACCAAGCCCTCCCTGCTGATCTTATCAAAAGGGGAATAGCAGTTGCGGATTCATCTTCCCCTCACGGTCTTCGTCTACTCATAGAGGATTACCCTTATGCTGTTGATGGACTTGACATTTGGGATGCTATTAAGACATGGGTACAAGACTACGTCTCCATATACTTCACATCAGATGAAAAAATTCAGCAGGACTCTGAACTCCAATCTTGGTGGAAAGAAGTTGTAGAAGTGGGTCATGGTGACAAGAAAGACGAGCCATGGTGGCCGAAAATGCAAACTCGCGAAGAGTTGATTCAAGTTTGCAGTATTATCATATGGACTGCTTCAGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCGTATGGAGGTTTCATATTAAACCGTCCAACTCTTAGTAGGCGATTAATGCCTGAGAAAGGTACTACCGAGTATAATGAGCTAGCTACCAACCCTCAGAAGGCCTACTTGAGAACAATTACACCGAAGTTTCAAACGCTGATTGATCTTTCAGTCATAGAAATATTGTCGAGGCATGCTTCTGATGAGTACTACCTTGGACAAAGAGACAGTGCTGAGTATTGGACTTCTGATACAAATGCCATAGCAGCCTTCAAGAAGTTTGGAAAAACCCTAGCTGAAATTGAGGGACAACTCATTCTGAGGAACAACAATGAATCATTGAGAAACCGAGTTGGGCCGGTTAGCATGCCTTATACCCTTCTTTTACCTTCAAGTGAGGAAGGACTTACTTTTAGAGGAATTCCCAACAGTATCTCCATCTAA 2571 0.401 MSFLFGNDKIKGTLVLMQKNVLDINSLTDPTKIIDGALDGFGSIFDTLTSFLGRSICLQLISSTKIGLTGEGKLGKEAYLKEAINNLPTLGDKQTAFSIEFEYDSNFGIPGAFKIKNFMSTEFLLVSLTLDDIPNVGTIHFVCNSWVYNAKNYLTDRIFFANNTFLPSETPAPLVYYRQLELKTLRGDGTGERKEWDRVYDYDVYNDLGDPDKGQSYARPVLGGSSSLPYPRRGRTGRKPTATDPNSESRSSSVYIPRDEAFGHLKSSDFLVYGLKSVSQDVIPLIQSVFDTNFTPNEFDSFDDVLDLYEGGIKLPTDILSQISPLPVLSEIFRTDGEQFLKFPTPKVIQVSKSAWMTDDEFGREILAGVNPGLIRSLQEFPPKSKLDSAVYGDHTSTITREHIQLNLDGLTVDEAIQNKKLFLLEHHDTIIPYLRLINSTSTKAYASRTVLFLKSDGTLKPLAIELSLPHPQGDQFGVVSNVYLPAIEGVEATVWLLAKAYVIVNDSCFHQLVSHWLNTHAVVEPFVIATNRQLSVLHPIYKLLHPHYRDTMNINALARSSLVNADGIIEKTFLWGGYAMEISSKVYKDWVFTDQALPADLIKRGIAVADSSSPHGLRLLIEDYPYAVDGLDIWDAIKTWVQDYVSIYFTSDEKIQQDSELQSWWKEVVEVGHGDKKDEPWWPKMQTREELIQVCSIIIWTASALHAAVNFGQYPYGGFILNRPTLSRRLMPEKGTTEYNELATNPQKAYLRTITPKFQTLIDLSVIEILSRHASDEYYLGQRDSAEYWTSDTNAIAAFKKFGKTLAEIEGQLILRNNNESLRNRVGPVSMPYTLLLPSSEEGLTFRGIPNSISI* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0533 856 MobiDBLite consensus disorder prediction 211 253 - -
Mtr8g0533 856 ProSitePatterns Lipoxygenases iron-binding region signature 1. 511 525 IPR020833 GO:0016702|GO:0046872
Mtr8g0533 856 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 856 IPR013819 GO:0016702|GO:0046872
Mtr8g0533 856 PANTHER LIPOXYGENASE 2 856 IPR000907 GO:0016702|GO:0046872
Mtr8g0533 856 Gene3D - 166 265 - -
Mtr8g0533 856 ProSitePatterns Lipoxygenases iron-binding region signature 2. 538 548 IPR020834 GO:0016702|GO:0046872
Mtr8g0533 856 Gene3D - 355 488 - -
Mtr8g0533 856 Gene3D - 266 354 IPR027433 -
Mtr8g0533 856 PRINTS Lipoxygenase signature 493 510 IPR013819 GO:0016702|GO:0046872
Mtr8g0533 856 PRINTS Lipoxygenase signature 511 528 IPR013819 GO:0016702|GO:0046872
Mtr8g0533 856 PRINTS Lipoxygenase signature 531 551 IPR013819 GO:0016702|GO:0046872
Mtr8g0533 856 ProSiteProfiles PLAT domain profile. 27 161 IPR001024 GO:0005515
Mtr8g0533 856 SMART LH2_4 8 162 IPR001024 GO:0005515
Mtr8g0533 856 Gene3D PLAT/LH2 domain 3 165 - -
Mtr8g0533 856 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 2 856 - -
Mtr8g0533 856 CDD PLAT_LH2 9 162 IPR042057 -
Mtr8g0533 856 Gene3D - 489 855 - -
Mtr8g0533 856 SUPERFAMILY Lipoxigenase 166 856 IPR036226 -
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 446 470 IPR001246 GO:0016491
Mtr8g0533 856 PRINTS Plant lipoxygenase signature 768 782 IPR001246 GO:0016491
Mtr8g0533 856 Pfam PLAT/LH2 domain 64 160 IPR001024 GO:0005515
Mtr8g0533 856 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 165 IPR036392 GO:0005515
Mtr8g0533 856 Pfam Lipoxygenase 174 839 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0533 Mtr-Chr8 6298336 6303064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0533 9 856 Acyl Lipid Metabolism Gene Families AT1G55020 59.767 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0533 K15718 - gmx:547869 1354.35