Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0473 ATGGCAAATAGTGAGACTTGTTGTTCAACTCAGCTTATTGATGGAGATGGATTATTCAATGCTTCTGGGATTGAAAAGTTTATGAAGGAAGTGAAATTGGGTGAATGTGGGCTTTCATATGCTGTAGTTTCTATTATGGGGCCACAGAGTAGTGGCAAGAGCACACTATTAAATAATTTGTTTCATACAAATTTCAGAGAGATGGATGCCTTTAAGGGAAGGTCTCAAACAACCAAAGGTATCTGGATGGCCAGATGTGCTGGCATAGAGCCTTGTACCCTTGTGATGGATTTGGAGGGTACAGATGGAAGGGAACGTGGAGAGGATGATACTGCATTCGAAAAGCAGAGTGCTCTGTTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCGCTTTTGAAAACTGTCTTTCAGGTTATGATGAGATTGTTTAGTCCACGCAAAACAACACTGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATCTAGAACCTGTTTTGAGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGATACCCCACTGAGTGAATTTTTCAACGTTGAAGTTGTTGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCCAGCTTGAGGCAACGTTTCAATCAGTCTATTGCTCCTGGTGGACTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGATTTTCTTTTAGTGCTCAGGAAATATGGAAAGTCATTAAGGAAAACAAAGATCTTGACCTTCCTGCACACAAGGTTATGGTTGCAACTGTACGATGTGAAGAAATTGCCAATGAGAAATATGCCGCTTTTGTCGCAAATGAGGAATGGTGTCAATTGGAAGAGACTGTGCAATCTGATCCTATTCCTGGATTTGGGAAAAAAATCAATTCACTTCTTCATGCTTGTTTGTCGGAGTATGATGCTGAGGCCACTTATTTCGATGAAGGTGTTAGAACTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTGCAACTTGTCCAACCAGCTTACCAATCTGCACTGGGACATATGAGATCTGTAACTTTGGAGAAATTCAAGGAGACATTTGAAAAGGCTTTGAAAGGCGGGGAAAGGTTTTCTGCAGCTGCTAATAATTGCATTGAGTCTTGTGTGGATCAATTTGATAAAGCATGTGCAGATGTTGTTATTGAACTAACAAATTGGGATACATCTAAAGTACGAGAGAAACTGCTGCGTGATATTGATGCACATGTTGCATCTGTGCGTGAAGCTAAGATTTCTGAACTTACTTCTTCATATGAGGAAAAACTGAAAGTATCTTTGTCTGGACCTGTCGAAGCTCTTTTAGATGGAGCTAATAGTGATACTTGGCCATCAGTAAGGAGCCTTCTTAAGCGTGAGATTCAATCATCTGTTTTAGGGTTTTCTGCTGCGCTTAATGGGTTTGATATGGATGAAGAAACAAGACAAAACATGATTTTGAGTTTAGAGGATTATGCAAGGGGTGTGGTAGAAGGAAAGGCTAGGGAAGAAGCTGGAAGGGTATTGATCCGTATGAAGGACAGGTTTACAATGTTATTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAATGAAGATATTCGAGCCATCACTAAAACTGCCCGCTCTGCTTCTTTGAAGTTGCTATCTGTTATGGCAGCACTTCGTTTGGATGATGGTGATAAAGATGATATAGAGAAAACATTGAAAGTTGCATTGCTGGATTCATCAAGCAGTGCTAATATAAGTAGGAGCATCACAGCGGTTGATCCGCTAGCTACTAGCAGTTGGGAACAGATTCCATCATCTAAGACATTAATTACACCTGTCCAGTGCAAAACTTTGTGGAGGCAATTCAAGATGGAGACAGAGTACAGTGTTTCTCAAGCCATTTCTGCACAGGAGGCCAACAAGCGTCATAACAACTGGTTACCTCCCCCATGGGCAATACTTGCTTTGGTTATTCTGGGATTCAATGAATTTATGACCCTTTTAAAAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTTTCTTCTCATTAAAGCCCTGTGGGTGCAACTTAACATTGCCGGTGAATTTCGTCATGGAGTACTTCCCGGAGTCATTTCCTTGGCTACCAAGTTTGTTCCAACTATCATGAACCTTATGAAAAGACTAGCAGAAGAGGGAAATAACCCTGCGGCTAACAATCCTCAAAGACACACATCACGAAACAACACCAATGCTGTTCCTGTTGGCAGTTCTGTTTCATCTAGTTCTTCATCTAACATAACCGCACTGGAAAATGGAAATCGATATACCAGTTCATCAAAAGATGAATAA 2436 0.4117 MANSETCCSTQLIDGDGLFNASGIEKFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFHTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKDTPLSEFFNVEVVALSSYEEKEEQFREQVASLRQRFNQSIAPGGLAGDRRGVVPASGFSFSAQEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFVANEEWCQLEETVQSDPIPGFGKKINSLLHACLSEYDAEATYFDEGVRTAKQKQLQEKLLQLVQPAYQSALGHMRSVTLEKFKETFEKALKGGERFSAAANNCIESCVDQFDKACADVVIELTNWDTSKVREKLLRDIDAHVASVREAKISELTSSYEEKLKVSLSGPVEALLDGANSDTWPSVRSLLKREIQSSVLGFSAALNGFDMDEETRQNMILSLEDYARGVVEGKAREEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGNEDIRAITKTARSASLKLLSVMAALRLDDGDKDDIEKTLKVALLDSSSSANISRSITAVDPLATSSWEQIPSSKTLITPVQCKTLWRQFKMETEYSVSQAISAQEANKRHNNWLPPPWAILALVILGFNEFMTLLKNPLYLGVIFVGFLLIKALWVQLNIAGEFRHGVLPGVISLATKFVPTIMNLMKRLAEEGNNPAANNPQRHTSRNNTNAVPVGSSVSSSSSSNITALENGNRYTSSSKDE* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0473 811 MobiDBLite consensus disorder prediction 761 811 - -
Mtr8g0473 811 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Mtr8g0473 811 CDD GBP 36 239 - -
Mtr8g0473 811 Coils Coil 218 238 - -
Mtr8g0473 811 Hamap Protein SEY1 [SEY1]. 9 765 IPR008803 -
Mtr8g0473 811 Gene3D - 19 246 IPR027417 -
Mtr8g0473 811 MobiDBLite consensus disorder prediction 763 804 - -
Mtr8g0473 811 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 3 787 - -
Mtr8g0473 811 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Mtr8g0473 811 PANTHER PROTEIN SEY1 3 787 IPR008803 -
Mtr8g0473 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 249 IPR027417 -
Mtr8g0473 811 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0473 Mtr-Chr8 5460570 5470105 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0473 K22698 - gmx:100777656 1359.74