Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0461 ATGGCTATGCAACAATTTGATCAGTATTACCACTACCAACAAGACGAACGGAGCAACATCAACACACTCTTCGTCTCCGGTCTCCCAGACGACGTGAAAGCGCGTGAGATTCACAACCTCTTCCGCCGTCGCCCTGGCTTCGACTCTTGTCAACTCAAGTATACCGGCCGCGCCAACCAGGTTGTTGCTTTTGCTACGTTTTTCAATCATCAAGCAGCAATGCAAGCGTTGCACTCCCTAAATGGTGTGAAATTTGATCCTCAATCTGGATCTGTTTTACATATTGAACTTGCCAGATCAAACTCTAGGCGGAAGCGAAAACCAGGTGGTGGAGCTTACGTGGTTATAGACAAAAGGTCAAAGGGGGAAGCCAATGTTCAGGGATCGTCAAGTGATGATGGTGAAAGTGACCCTGATGAACCATCAGAAAATGGCAGCAACCATGGCGATATAGCAACCGCGCAAAGTGGTGATGCAGTTGTTGGTTCTGACAATCATGTACCTGTGGCAAGGGCGCAACATGGAAAGGGTGGTGGTGATGGAGGACCATGTTCCACTCTTTTTATTGCAAATCTTGGTCCAAACTGCACTGAGGATGAATTAAAGCAAGCTTTATCTGTGTATGCTGGATTCAACTTGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGTTAAGGTCATGGAGGAGCTTCAGGGAAGCTCGCTTCCATCATCAGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAGAATGAGGAAGAAGCGATAG 807 0.4684 MAMQQFDQYYHYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQAAMQALHSLNGVKFDPQSGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGEANVQGSSSDDGESDPDEPSENGSNHGDIATAQSGDAVVGSDNHVPVARAQHGKGGGDGGPCSTLFIANLGPNCTEDELKQALSVYAGFNLVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSSLPSSDRGGMHIEYARSRMRKKR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0461 268 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 256 - -
Mtr8g0461 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Mtr8g0461 268 SMART rrm1_1 22 96 IPR000504 GO:0003723
Mtr8g0461 268 SMART rrm1_1 186 258 IPR000504 GO:0003723
Mtr8g0461 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Mtr8g0461 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 249 IPR000504 GO:0003723
Mtr8g0461 268 Gene3D - 181 268 IPR012677 -
Mtr8g0461 268 SUPERFAMILY RNA-binding domain, RBD 21 245 IPR035979 GO:0003676
Mtr8g0461 268 CDD RRM_scw1_like 183 261 - -
Mtr8g0461 268 CDD RRM_RBPMS_like 21 96 - -
Mtr8g0461 268 Gene3D - 15 103 IPR012677 -
Mtr8g0461 268 PANTHER RNA-BINDING PROTEIN-RELATED 7 256 - -
Mtr8g0461 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Mtr8g0461 268 MobiDBLite consensus disorder prediction 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0461 Mtr-Chr8 5367982 5373983 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0461 - - cam:101503574 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0461 8 5367982 5373983 Mtr8g0461 8 5367982 5373983 ECH