Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0394 ATGGGTAGTTCTGAAGGGTTAGGAGCATCATCAAAGCCTGCGAATTCTTCTTCGCCGGCGGTGCCGGAGAAACAATACGGTGTCACAAAGGCTATTTCAATGGCTGGGCCAACAAGTGCTGATAGGAAAAGGACTCAACAATTGGAGAAGTTTCTGGTTGAATCGGGGTTGTATGAGAGCAAGGAGGAGGCTGACAAGAGGGAAGAGGTTCTTCATAGACTTGGACAGATAGTAAAAAGTTGGGTAAAGCACCTTACTCGCCTGAAAGGGTACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATTCTCACATTTGGTTCTTATCGTCTTGGCGTTCATGGACCTGGAGCCGACTTGGATACACTGTGTATTGGGCCATCCTATGTGAACCGCGAGGAGGATTTTTTCTACACGTTCCATGATATCCTGGCTAGCATGGATGAAGTTACTGAACTGCAACCAGTTCCAGACGCTCATGTCCCAGTTATGAAGTTCAAGTTTGATGGAATTTCGATTGACCTTCTTTATGCAAGTATTTCTTGCTTGATTGTACCTGAAGAATTGGATATATCTGATGTCTCTGTTCTACATAATATTGATGAGCCTACTGTTCGAAGTTTGAATGGTTGTAGAGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATATTGAGTACTTTCGAACAACACTCCGGTGCTTGAAGTTTTGGGCCAAAAGACGAGGTGTTTATTCCAATGTGACAGGTTTCCTCGGTGGTGTTAACTGGGCACTTCTTGTAGCTCGAGTATGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGTGTATACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGTTCGATAGAGGAGAACGAGCTTGGGTTTTCTGTGTGGCATCCTCTTAGAAATCCCCGTGATCGATCTCATCTTATGCCAATCATAACTCCCGCATATCCGTGCATGAATTCAAGTTATAATGTTTCTGCAAGCACACTTCGAGTTATGATGGAGCAGTTCCAATATGGCAACAAAATCTGTGAGGACATTGAACTGAATAAAGTCGGCTGGAGTGCTCTGTTTGTACCATATGTTTTCTTTGAAGGCTACAAAAACTTTCTGCAAATTGACGTAGTTGCTGCTGATGTTGATGACTTGCGTGCTTGGAAAGGTTGGGTGGAATCACGCCTTCGGCAGCTGACTTTGATGATTGAGCGTGATACTATTGGGAAGTTGCAGTGCCATCCTTATCCTCGGGAGTATATTGATGATACAAGGAAATGTTCACATAGTGCTTTCTTCATGGGCTTGCAGAGGAAACAGGGGGAGGTTGTTCAAGAAGGCCAGCAGTTTGATATACGTGGAACTGTTGAAGCATTTCGGCATTCTATTAATATGTACATGTTCTGGAAACCTGGGATGGACATTCATGTTTCACACATCCGTAGAAGGCAAATCCCTTGCTATGTGTTTCCTGATGGTTTTAAACGATCTCGACCATCAAGGTCAACAGTACCAGTGGAGAATCGTCCAAAATCACTTCAAGAAAATGAGGTTTCTGGGACTGAACTTCGTGGGAGGAACATTAAGAGGAAGTATGATGACAAGGGGGTGAAGCAGGATGTTGTGCTGAAAAAACATTGCGCCAATCCTTTTGTGGAGAGCTTGACACCTGGCAACTACGCTGTATCTGATTGTCAAGAGTTGAAGAGTGGTGAGAGTACGAGTTTGACCAATAGTGAGCAAGATGAGTTGGATAGAAGAATGTCTCCAGAAGCTGGGACTGAATGTGGATCGAATTCTAGCGGGGTTACATCTGTTTCGAGCGAAGATGGCTCTCCCGAATATGTTGCGTCTGTATCAGTGGCAGGGTATGTTGATGATAGCGCCAGGGCTGTTGAGGCAATGAACAACAGTAGATTCGATACCACCTACATGGCAGATTCTGTAAAACTTGGAATTGGTACACTGGCCAGTGCAAACAATGAAGTATTACAAGACACACTACAGACACATTTGGAGCCAATTGCAATGGCAGGGATGTTTCTTGATTCTACGAAGGAAAGCTTTGACTCAGAAGCTGTTCCAAAGACAGTAATAAGGAGACTGAGTCTAACATCGACAGCGTGA 2154 0.4415 MGSSEGLGASSKPANSSSPAVPEKQYGVTKAISMAGPTSADRKRTQQLEKFLVESGLYESKEEADKREEVLHRLGQIVKSWVKHLTRLKGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDAHVPVMKFKFDGISIDLLYASISCLIVPEELDISDVSVLHNIDEPTVRSLNGCRVADQILKLVPNIEYFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFSVWHPLRNPRDRSHLMPIITPAYPCMNSSYNVSASTLRVMMEQFQYGNKICEDIELNKVGWSALFVPYVFFEGYKNFLQIDVVAADVDDLRAWKGWVESRLRQLTLMIERDTIGKLQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMYMFWKPGMDIHVSHIRRRQIPCYVFPDGFKRSRPSRSTVPVENRPKSLQENEVSGTELRGRNIKRKYDDKGVKQDVVLKKHCANPFVESLTPGNYAVSDCQELKSGESTSLTNSEQDELDRRMSPEAGTECGSNSSGVTSVSSEDGSPEYVASVSVAGYVDDSARAVEAMNNSRFDTTYMADSVKLGIGTLASANNEVLQDTLQTHLEPIAMAGMFLDSTKESFDSEAVPKTVIRRLSLTSTA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0394 717 Pfam Poly(A) polymerase predicted RNA binding domain 374 432 IPR007010 GO:0003723|GO:0043631
Mtr8g0394 717 Gene3D - 27 369 - -
Mtr8g0394 717 CDD NT_PAP_TUTase 66 221 - -
Mtr8g0394 717 PANTHER POLY A POLYMERASE 15 591 - -
Mtr8g0394 717 PANTHER NUCLEAR POLY(A) POLYMERASE 4 15 591 - -
Mtr8g0394 717 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 374 500 IPR011068 GO:0003723|GO:0016779|GO:0031123
Mtr8g0394 717 Pfam Nucleotidyltransferase domain 100 176 IPR002934 GO:0016779
Mtr8g0394 717 MobiDBLite consensus disorder prediction 508 528 - -
Mtr8g0394 717 MobiDBLite consensus disorder prediction 1 23 - -
Mtr8g0394 717 MobiDBLite consensus disorder prediction 579 621 - -
Mtr8g0394 717 Pfam Poly(A) polymerase central domain 27 370 IPR007012 GO:0004652|GO:0043631
Mtr8g0394 717 SUPERFAMILY Nucleotidyltransferase 24 220 IPR043519 -
Mtr8g0394 717 Gene3D Poly(A) polymerase predicted RNA binding domain 373 489 - -
Mtr8g0394 717 MobiDBLite consensus disorder prediction 602 621 - -
Mtr8g0394 717 Gene3D Beta Polymerase, domain 2 59 215 IPR043519 -
Mtr8g0394 717 SUPERFAMILY PAP/OAS1 substrate-binding domain 222 369 - -
Mtr8g0394 717 MobiDBLite consensus disorder prediction 1 44 - -
Mtr8g0394 717 MobiDBLite consensus disorder prediction 510 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0394 Mtr-Chr8 4484691 4490231 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0394 K14376 - gmx:100783237 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0394 8 4484691 4490231 Mtr8g0394 8 4484691 4490231 ECH