Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0226 ATGAACAAGACAACAACCTTGGTAGCTCCAAACGATGTTCCTGCTGGTGGTTTTGAAGTTGGTGAAGGAAGTGGAGGTGGACATGGAAATGGTGGTGGTGATGGTGGAAAAGATGGTTTTTTTACTGAAAAGGAGAATACCCAGTTGGAAAATGAGGATACCCAGATGGAAAATTCTGATGAAGAAAATGGGGATGATGATCTTGAACTTGAAGAAAGACTTCCTTCTCTTGGTGATGGTTTCTATGAGATTGAAGCTATTCGTCGTAAGAGATACCGCAAGGGTAAGTTGGAGTACTTTGTGAAATGGTTGGGCTGGGGTGAGCATGCAAACACTTGGGAGCCTCCAGATAATTTAGTTGGTGTTCCTGAAATTATTGAAGCTTTTGAGAAGGGCTGTAAAACACCAAAGCAGCCAAAGCAGCAAAAGCGCAAACGCAAGCATGCAGGTCCTCAAACTCAAGTCAAGAAGAGGGTGGAACGTTCCGCCACTCCTTACAGCCTTAGATGCTTAAAAACTAGCACCGCGAACAACAACCATGCACAGGCAGCTGCTAACAACCATTCAGCGCCTGCCTCTCTCAGTGAACAACTTCCTTATATTCCCAACACTCCTGCATTTCCTCAGACTGTGCTGTTTGCCGATGAAGTTGAAAATAATGGTGAGGGAAGCAGTCTTACTAAAGAAAACCATGCTAATGACAATAAGACTGCAAATCCTCCAGAAGAGGTTCCTCAAAATAACGAGGAAAAGGAGTATGACCCTAAGCTTAGTGAACTTAAAGCTACGACATCTAATGGGATTGATGCTGACAAACCTGAAGATGCGACTACCAATGGAAATGGTGCAGGCAACCTCGCAATGCAGTTTCAAGAAGCTATGGTTCCTCCAGGAGAAACTGGCATGAATGATCAACCAATGGTGGTTAGCACAGAAGGAAATGTGGTTAGCACAGAAGGAAATGAGGTTAGCACAGAACCAGTTCAAAGTGGCTCCGGAAGACCAAGAGGCAGGCCGAGAAAATCTCTTGCTAAGAAGTTCAAGATAGATTCATGTGCTGATAAGCCTGGTAATACACAAATTCCAAATTCGGCACCGGTTGATACAGCTGAGCTAGCACAAACAGGCGTTACTGATAATGCGACTGCTAGTAGTAATACAGCGACAGAATCTGTTAAACCCGCAGGCGATATTGTCAAGATTATTAAGCCAGTAGGCTATACACCTGCAGCAGCCAGCACCACACAGGATGTTTTGGTGACTTTTGAGGCTATAAGGTCTGATGGATCTGAAGTTGTGGTCGATAACAATCATCTCAAAACATATCATCCGATCCTATTGATTGATTACTATGAGCAGCATCTGCGCTACAATCCGAAAGCAATGTGA 1389 0.4413 MNKTTTLVAPNDVPAGGFEVGEGSGGGHGNGGGDGGKDGFFTEKENTQLENEDTQMENSDEENGDDDLELEERLPSLGDGFYEIEAIRRKRYRKGKLEYFVKWLGWGEHANTWEPPDNLVGVPEIIEAFEKGCKTPKQPKQQKRKRKHAGPQTQVKKRVERSATPYSLRCLKTSTANNNHAQAAANNHSAPASLSEQLPYIPNTPAFPQTVLFADEVENNGEGSSLTKENHANDNKTANPPEEVPQNNEEKEYDPKLSELKATTSNGIDADKPEDATTNGNGAGNLAMQFQEAMVPPGETGMNDQPMVVSTEGNVVSTEGNEVSTEPVQSGSGRPRGRPRKSLAKKFKIDSCADKPGNTQIPNSAPVDTAELAQTGVTDNATASSNTATESVKPAGDIVKIIKPVGYTPAAASTTQDVLVTFEAIRSDGSEVVVDNNHLKTYHPILLIDYYEQHLRYNPKAM* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0226 462 ProSiteProfiles Chromo and chromo shadow domain profile. 82 141 IPR000953 -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 54 69 - -
Mtr8g0226 462 ProSitePatterns Chromo domain signature. 99 119 IPR023779 -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 1 70 - -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 220 284 - -
Mtr8g0226 462 CDD CD_CSD 82 131 - -
Mtr8g0226 462 Gene3D - 41 139 - -
Mtr8g0226 462 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 45 460 IPR044251 GO:0006325|GO:0031507
Mtr8g0226 462 MobiDBLite consensus disorder prediction 133 163 - -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 220 244 - -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 315 343 - -
Mtr8g0226 462 SMART ChS_2 387 460 IPR008251 GO:0005634
Mtr8g0226 462 SUPERFAMILY Chromo domain-like 69 139 IPR016197 -
Mtr8g0226 462 SMART chromo_7 81 134 IPR000953 -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 315 331 - -
Mtr8g0226 462 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 45 460 - -
Mtr8g0226 462 Pfam Chromo (CHRromatin Organisation MOdifier) domain 82 131 IPR023780 -
Mtr8g0226 462 MobiDBLite consensus disorder prediction 138 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0226 Mtr-Chr8 2572556 2577173 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0226 - - aprc:113849713 350.903