Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0214 ATGCAAGGGTTCATTGCTCTTGCTTTGATTCTTGGTTTTGTTTCACCTTGTCTATGTACAAGGATGAATGTTGGAACCGAAAATGCAATTTATAATGTGATACAATATGGTGCACGTGGCGATGGCATAACTGATGATTTACAAGCATTTGTTAGTGCATTTAGCAGTGCGTGTAAAGCAGCAGGGATGTCAACACTAATAATACCAGCTGGAAAAAAATACATGGTGTCGAAAGCAAATTTTAGTGGTCCTTGCAGCGCCAGAGTTCTCATTCAGCTTGAAGGGCAAATTGTCGCACCTTCTAGAGCAGCGTCGAAATCTAAGTTATATTGGATTAGTGTCAAATATGTAAACGAACTCACAATTGATGGCAATAACAAAGGAGGTTTTCATGGAGGTGGTCGTACTTGGTGGCAATGCCCAACTTGTGATCGACCTAAGATGTTGTTTTTCCATTCCTGCAATGGTCTCAATGTTAGGAACTTGAGGATCTTGAATAGCCCAAAATCTCATGTTTCTGTTAATATGTGCAATCATTCAACATTTTCTCATATATCTATTAATTCTGCTGCTGCTAGCCCCAACACTGATGGATTTGACATTTCTCGTTCCAATAATATCTCGATAGAAAATTCTAAGATAAGATCCGGTGATGATTGTATTGCGGTTAACGGTGGCTCCTTTTTTATTAATATTACTCGGGTTACTTGCGGACCAGGCCATGGAATAAGTATTGGCAGCCTTGGTAGAAATAGATTAAATGATAAAGTTTCCGATGTTCATATACGTAATTGTACCTTCATTGGGACTACAAATGGAGCAAGAATCAAGACGGTTCCGGGTGGATCAGGTTATGCAAGACAGATTACATTTGAACAAATCATCCTTAGTAATGTTAAGAACCCAATAATTATAGACCAAGGATACAAAATTAGTCCAACGGATACATCTGTGAAGGTGAGTTCTGTGACATATCGAGGATTTATTGGAACTTCTGCTAGCAAGATAGCTGTTAATTTAAATTGTAGCTCCCCTGGTTGTTTCAATATTCTATTGGATCAAAATAACATTGTAGCTACTCAAGCAGGAAAAAAGACTTCATTTTTTTGTAGAAATGCTCATGGAACAGTTAGAAATACTTTTCCAAATGTCTCTTGCCTATCTAGTTAA 1170 0.3778 MQGFIALALILGFVSPCLCTRMNVGTENAIYNVIQYGARGDGITDDLQAFVSAFSSACKAAGMSTLIIPAGKKYMVSKANFSGPCSARVLIQLEGQIVAPSRAASKSKLYWISVKYVNELTIDGNNKGGFHGGGRTWWQCPTCDRPKMLFFHSCNGLNVRNLRILNSPKSHVSVNMCNHSTFSHISINSAAASPNTDGFDISRSNNISIENSKIRSGDDCIAVNGGSFFINITRVTCGPGHGISIGSLGRNRLNDKVSDVHIRNCTFIGTTNGARIKTVPGGSGYARQITFEQIILSNVKNPIIIDQGYKISPTDTSVKVSSVTYRGFIGTSASKIAVNLNCSSPGCFNILLDQNNIVATQAGKKTSFFCRNAHGTVRNTFPNVSCLSS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0214 389 SMART pbh1 257 278 IPR006626 -
Mtr8g0214 389 SMART pbh1 177 203 IPR006626 -
Mtr8g0214 389 SMART pbh1 204 225 IPR006626 -
Mtr8g0214 389 SUPERFAMILY Pectin lyase-like 24 387 IPR011050 -
Mtr8g0214 389 PANTHER - 1 387 - -
Mtr8g0214 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
Mtr8g0214 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Mtr8g0214 389 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Mtr8g0214 389 Gene3D - 17 386 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0214 Mtr-Chr8 2437809 2442434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0214 30 375 Glycoside Hydrolase AT5G27530 46.218 2.44e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0214 K01184 - gmx:100820332 412.149