Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0212 ATGGCGTCGAAAATACATTTTAGTGGTCCTTGCAGCGCCAAAATTCTCATCCAGCTTAAAGGGAAAATAGTTGCACCTTCTAAAGCAGCATGGAGAGGTGGATCAGAATGGATTAACGTTGAATATGTAAATGGACTCACAATTGATGGCAATGGTGAAGGAAGTGTCCTTGGAGATGGTCCTACTTGGTGGCAATGCCCCCGTTGTAGTCGACCCACGTATGTATCATGTGACATAATTTTTTTGATGGTACAGATGTTGCATTTTCATTCTTGTAATGATCTCAATGTTCGAAATTTGAGGATCTTAAATAGCCCAAGATCTCATGTTTCTGTTAATATGTGCAATCATGCAACATTTTCCTATATATCCATTAGTTCTCCTGCTACTAGCCCCAACACTGATGGGTTTGATATATCTCATTCCAATAATATCTTGATACAAGATTCCAACATAAAATCTGGTGACGATTGTATTGCAGTAAATGGTGGCTCCACTTTTATCAATGCTACTCGGGTTACTTGTGGACCAGGCCATGGGATAAGTGTTGGTAGCCTTGGTGGAAATGGAGCAAATGATCAAGTTTCCGATGTTCATGTAAGAAATTGCACCTTTATAGGGACTCAAAATGGAGCAAGAATCAAAACTGTTCCGGGTGGATCAGGTTATGCTAGAAAAATAACATTTGAGCATATTGTGCTTGTCAATGTTATGAACCCGATAATAATAGATCAGGCTTACACTCTTAGTACACTGGATACAGCTGTGTCGGTGAGAGATGTGACATATCGAGGATTTACCGGAACTTCTTATAGTGATATAGCAATTGATTTAAAGTGTAGTTCTTCTGGTTGTTTTAAGATTCTATTAGATCAAAATAACATTGTATCTGCTCAACCAGGAAAGAAGACTTCCTCTTTTTGTAGAAATGCTCATGGAATAGTTAGAAATACTATTCCAATTGTCCCTTGCCTATCTAATTAA 984 0.3821 MASKIHFSGPCSAKILIQLKGKIVAPSKAAWRGGSEWINVEYVNGLTIDGNGEGSVLGDGPTWWQCPRCSRPTYVSCDIIFLMVQMLHFHSCNDLNVRNLRILNSPRSHVSVNMCNHATFSYISISSPATSPNTDGFDISHSNNILIQDSNIKSGDDCIAVNGGSTFINATRVTCGPGHGISVGSLGGNGANDQVSDVHVRNCTFIGTQNGARIKTVPGGSGYARKITFEHIVLVNVMNPIIIDQAYTLSTLDTAVSVRDVTYRGFTGTSYSDIAIDLKCSSSGCFKILLDQNNIVSAQPGKKTSSFCRNAHGIVRNTIPIVPCLSN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0212 327 SMART pbh1 142 163 IPR006626 -
Mtr8g0212 327 SMART pbh1 195 216 IPR006626 -
Mtr8g0212 327 SMART pbh1 115 141 IPR006626 -
Mtr8g0212 327 SMART pbh1 224 245 IPR006626 -
Mtr8g0212 327 PANTHER - 1 325 - -
Mtr8g0212 327 Pfam Glycosyl hydrolases family 28 4 312 IPR000743 GO:0004650|GO:0005975
Mtr8g0212 327 SUPERFAMILY Pectin lyase-like 3 325 IPR011050 -
Mtr8g0212 327 Gene3D - 2 316 IPR012334 -
Mtr8g0212 327 ProSitePatterns Polygalacturonase active site. 172 185 IPR000743 GO:0004650|GO:0005975
Mtr8g0212 327 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0212 Mtr-Chr8 2424737 2426999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0212 1 326 Glycoside Hydrolase AT3G15720 42.899 7.88e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0212 K01184 - gmx:100801217 359.377