Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0109 ATGGTGGAGGCGCTGAAACTGTTGAACCTAACATGGAACCCATTGAAGAACAATTTCATTCACGCATTTCGTCGAACACCTCGCACGCTTCTTATCCGCGCCTCTTCTTCTTCAACCACCTCCTCCGGTCGCAACCGCCGTAATTCTCCGTCGTCCTCCACCACTTCCACCTCCGATAGGGAGTCTATTCGAGCCATGCGCTTGAAGAAGGTTGAAGAACTTAGAAGCAAGGGGCACAATCCCTATGCTTATGAGTGGAACAAAACGCACAGTGCAAATCAGTTACAAGATATATATAAAGATTTAGGAAATGGTGAAGAAACTAATAGTGAGAATGATCATGTATCTATTGCGGGAAGAATTATCGCTAGGAGAGCATTTGGAAAGCTTGCCTTTTTGACACTAAGAGACGATTCAGGGACAATTCAGCTCTATTGTGAAAAGGAGAGACTTGATGATCAGTTTGAGCAGTTGAAGGCATATGTTGATATTGGTGATATACTAGGTGCAAGAGGAACAATTAAACGCACAGAAAAAGGGGAACTTTCTGTGTGTGTGCTATCTTTTGCAATCCTTACAAAATCTTTGCTTCCACTTCCTGACAAATATCACGGTCTAACTGATATAGATATACGCTATCGCCAGAGGTATGTAGATATGATTGCAAATCCAGAGGTAGCTGATGTGTTCCGCAAAAGAGCCAAGGTTGTATCAGAGATAAGGAGGACAATGGATTCTTTAGGTTTCGTTGAGGTTGAAACTCCAGTTTTGCAGGGAGAAGCTGGGGGAGCCGAAGCTAGACCATTCGTGACATACCACAATTCTCTTGGAAGAGACTTATATTTGAGAATTGCGACTGAATTGCACCTAAAGAGAATGCTGGTGGGTGGGTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATATCAACTCGTCATAATCCAGAATTTACAACTATAGAGATGTATGAAGCATACTCAGACTACCAAAGCATGATGAATTTAGCAGAGGAAATTGTCACTCAGTGTGCTCTTGCAGTTCACGGAAAGCTTACCGTTGATTATCAGGGAGTTGAGATATGTTTGGAAAGGCCCTGGAGGAGGGAGACCATGCACAATCTTGTTAAAGAAATTTCCGGGATCGATTTCGATGAATTGGGAAATGATCTCGAGGTTGCAAAACAAGCTACTCTGAGTACCCTTGGAAAGAATCTTGATAACAAGGATAAAGCTTCCATTGAAGCATGCCAATCTGCCGGCCACCTACTTAACGAGGTTTTTGAGATATATGTAGAACCAAAGCTCATCCAGCCTACATTTGTTTTAGACTACCCAATCGAGATATCTCCATTGGCTAAACCACACCGCAGATCCACAGGTTTGACTGAGAGGTTTGAACTTTTCATTTGTGGTCGGGAACTAGGCAATGCATTCTCCGAATTGACTGATCCTATAGATCAGCGAGGACGCCTAGAAAATCAAATTAGACAACATGAAAAGAAAAAAGCAGCTCTTTCCACAAATGGTGATAAAAAAGAGGGAATAGAGAATGAGGATGATTCGTACGATGTGACTCTTGACGAAGATTTCCTAACGGCTTTGGAGTATGGAATGCCTCCAGCTTCTGGAATGGGACTTGGGATTGACAGGCTGGTGATGCTTTTGACAAATTCTCCCAGCATTAGAGATGTAATAGCCTTCCCAGTACTCAAGGTCCAACAATAA 1737 0.4243 MVEALKLLNLTWNPLKNNFIHAFRRTPRTLLIRASSSSTTSSGRNRRNSPSSSTTSTSDRESIRAMRLKKVEELRSKGHNPYAYEWNKTHSANQLQDIYKDLGNGEETNSENDHVSIAGRIIARRAFGKLAFLTLRDDSGTIQLYCEKERLDDQFEQLKAYVDIGDILGARGTIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDIRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGEAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTQCALAVHGKLTVDYQGVEICLERPWRRETMHNLVKEISGIDFDELGNDLEVAKQATLSTLGKNLDNKDKASIEACQSAGHLLNEVFEIYVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLENQIRQHEKKKAALSTNGDKKEGIENEDDSYDVTLDEDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0109 578 PANTHER LYSINE--TRNA LIGASE 46 578 - -
Mtr8g0109 578 MobiDBLite consensus disorder prediction 34 61 - -
Mtr8g0109 578 TIGRFAM lysS_bact: lysine--tRNA ligase 63 576 IPR002313 GO:0004824|GO:0005524|GO:0006430
Mtr8g0109 578 Pfam OB-fold nucleic acid binding domain 115 188 IPR004365 GO:0003676
Mtr8g0109 578 Coils Coil 492 512 - -
Mtr8g0109 578 CDD LysRS_core 223 575 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mtr8g0109 578 Hamap Lysine--tRNA ligase [lysS]. 66 577 IPR002313 GO:0004824|GO:0005524|GO:0006430
Mtr8g0109 578 Gene3D Bira Bifunctional Protein; Domain 2 204 578 IPR045864 -
Mtr8g0109 578 SUPERFAMILY Nucleic acid-binding proteins 60 201 IPR012340 -
Mtr8g0109 578 SUPERFAMILY Class II aaRS and biotin synthetases 208 574 IPR045864 -
Mtr8g0109 578 PANTHER LYSYL-TRNA SYNTHETASE 46 578 - -
Mtr8g0109 578 Pfam tRNA synthetases class II (D, K and N) 210 574 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr8g0109 578 Gene3D - 53 203 IPR012340 -
Mtr8g0109 578 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 230 572 IPR006195 -
Mtr8g0109 578 PRINTS Lysyl-tRNA synthetase signature 245 255 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mtr8g0109 578 PRINTS Lysyl-tRNA synthetase signature 261 277 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mtr8g0109 578 PRINTS Lysyl-tRNA synthetase signature 290 303 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mtr8g0109 578 PRINTS Lysyl-tRNA synthetase signature 308 325 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mtr8g0109 578 PRINTS Lysyl-tRNA synthetase signature 441 457 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mtr8g0109 578 MobiDBLite consensus disorder prediction 504 523 - -
Mtr8g0109 578 MobiDBLite consensus disorder prediction 34 63 - -
Mtr8g0109 578 CDD LysRS_N 114 220 IPR044136 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0109 Mtr-Chr8 1284305 1293610 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0109 K04567 - gmx:100787720 1001.5