Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0028 ATGTTCCTTTCACTCAGATACTCCTTCACATTTCTCTTCACTACTCTTCTCCTCACATTATCATCATCTTCACACATTGCTTCCAAAATATCCATCTCAAATCATGACATTCATAGCTTCACCAATGCTGTCAGAGGCAACAACATCACAGGAATATCACAGTTCAAAAGATACCTATCTCGTTTCGGGTACATTAAAAACAATGACACATTCAGCGACAAATTTGATTCGAATTTTGAATCAGCTATCATCAAATACCAAAGAAATCTTGGACTCCAAGTAACCGGTAAACTCGATTCGAATACAGTTTCTCAAATGATCACACCAAGATGCGGTGTTCCAGACACAACAAAAACTCATCATTATCATAATCACCATCAAAATCATATTCATAACAAGACGAATTTTGTTTATTTTCCTGGAAAACCGCGATGGTCACGCGACATGCCAATGACACTAACCTATGGCTTCTCAAGTGACTACATGATTCATAACTTGAGCATACAAGAGATAAGAGAAGCATTCAAACGAGCTTTCTCTAGATGGAGTTCAGTTATTCCAGTTAGTTTCGTCGAATCAGAGGACTATGGTTTCGCTGATATAAAAATAGGATTTTATAGTGGTGACCATGGTGATGGTGAGCCATTTGATGGAGTTCTTGGTGTGTTAGCTCATTCGTTCTCACCGGAGATCGGAAGACTTCACCTCGATGCAGCCGAGACTTGGGCAGTTGATTTCGGTGTAACGAAATCGGAGGTGGCAATTGATTTAGAGTCAGTTGCAACACATGAGATTGGACATTTGTTGGGTTTGTCACATAGTTCTTTGAAAGAGGCAGTAATGTATCCAAGTTTAAGGCCAAGAGATAAAAGAGCTGATTTGAATATTGATGATATTAAAGGTGTACAATCTCTTTATGGTTCTAATCCTAATTTTAGATCTCAGTGGTCATCATTGGAATCTGATATCTCCACAAATCATGGTGCAAAATTTGGAGTTGACACTTACAGGTTCTCTATGATTGCTTCCATTATTGCAATTGCCCTGTATTATATATAA 1059 0.3815 MFLSLRYSFTFLFTTLLLTLSSSSHIASKISISNHDIHSFTNAVRGNNITGISQFKRYLSRFGYIKNNDTFSDKFDSNFESAIIKYQRNLGLQVTGKLDSNTVSQMITPRCGVPDTTKTHHYHNHHQNHIHNKTNFVYFPGKPRWSRDMPMTLTYGFSSDYMIHNLSIQEIREAFKRAFSRWSSVIPVSFVESEDYGFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFGVTKSEVAIDLESVATHEIGHLLGLSHSSLKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSQWSSLESDISTNHGAKFGVDTYRFSMIASIIAIALYYI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0028 352 SUPERFAMILY PGBD-like 46 116 IPR036365 -
Mtr8g0028 352 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 137 310 - -
Mtr8g0028 352 SMART col_5 141 308 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mtr8g0028 352 Gene3D Collagenase (Catalytic Domain) 43 313 IPR024079 GO:0008237
Mtr8g0028 352 PANTHER METALLOENDOPROTEINASE 4-MMP 17 349 - -
Mtr8g0028 352 CDD ZnMc_MMP 144 307 IPR033739 GO:0008237|GO:0008270
Mtr8g0028 352 PANTHER MATRIX METALLOPROTEINASE 17 349 - -
Mtr8g0028 352 Pfam Matrixin 145 307 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mtr8g0028 352 PRINTS Matrixin signature 106 119 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g0028 352 PRINTS Matrixin signature 175 190 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g0028 352 PRINTS Matrixin signature 199 227 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g0028 352 PRINTS Matrixin signature 260 285 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g0028 352 PRINTS Matrixin signature 294 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g0028 352 Pfam Putative peptidoglycan binding domain 52 106 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0028 Mtr-Chr8 347737 348903 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0028 - K07999 gmx:100781237 461.07