Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g0025 | ATGGGAAAAATTCCTCCTTCATTTCGATCTGCACTCTCAAACCCTAATTTGATTCACCGTTCATCTTCATTGATTCCTTCTTCTCCCAAACCCCATCATTTTCCTAACAAAACCCGAAAACCCCATCAAAAACAACAACAATCTCAATCTCAATCTCAATCTCCAAAACCCGTTTCTGTATTCAAATCCCCAAATCTCCAAGAAGCCAAAAGCATCTTCAATTCCTTCGTCAACAGTTCCAATGCTCCTATTGATTCCCGTTTTCATAATTCCCTTCTTCAATCCTACGCTTCAATTTCCACCATTAACGATTCCATTGCTTTTCTTCGTCATATGACAAAGACCCATCCTTCATTCTCACCTGATAAATCTACTTATCATATCTTACTTACCCATTGCTGCAAATCAACTGATTCCAAGTATTCTACACTTTCCCTAATTCATCAAACCCTAAATTTGATGGTTTCTGATGGGATCAGTCCTGATAAAGGTACTGTTGATTTAGCTGTTAGGTCACTTTGTACTGCGGATCGTGTTGACGATGCTGTTGAATTGATCAAAGAGCTGTCTTCCAAGCATTGTAGTCCTGATATTTACTCTTACAATTTTCTTGTTAAGAATTTATGTAAGTCTCGCACTTTGAGTTTGGTTTATGCTTTTATTGATGAAATGCGTACTAAGTTTGATGTCAAGCCTAATCTTGTTACTTATACTATTTTGATTGATAATGTCTGTAACACTAAGAATTTGCGTGAGGCGACGAGGTTGGTGGATATTCTCGAAGAGGAAGGTTTTAAGCCTGATTGTTTTCTTTATAATACCATTATGAAAGGTTATTGTATGCTGAGTAGAGGGAGTGAGGCCATTGAGGTTTATAATCGAATGAAGGAGAAGGGTGTGGAGCCTGATCTTATTACTTATAATACTTTGATTTTTGGGTTATCAAAATCTGGTCGGGTTTCAGAAGCTAAGAAGTTATTGCGTGTTATGGCGGAAAAGGGTCATTTCCCTGATGAGGTAACTTATACCTCTCTGATGAATGGGATGTGCAGGAAAGGGGAGACCTTGGCTGCATTGGCATTGTTGGAAGAGATGGAAATGAAGGGCTGCAGTCCGAATACGTGCACGTATAACACGCTGCTTCATGGGTTGTGTAAGTCTAGGATGTTTGATAAGGCCATGGAATTGTATGGTGCGATGAAATCGGATGGTCTGAAGCTTGATATGGCTTCTTATGCTACGTTTGTCAGGGCACTGTGTAGTGTTGGTAGAGTTGCGGATGCTTATGAAGTGTTTGATTATGCAGTCGAAAGCAAGAGTTTGTCAGATGTCGCTGCTTACTCTACATTGGAAAGCACACTTAAATGGTTCAAGAAAGCAAAAGAAGAAGGCCTTAAATTTTAA | 1404 | 0.3925 | MGKIPPSFRSALSNPNLIHRSSSLIPSSPKPHHFPNKTRKPHQKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSYASISTINDSIAFLRHMTKTHPSFSPDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLESTLKWFKKAKEEGLKF* | 468 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 411 | 439 | IPR002885 | - | |
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 235 | 269 | IPR002885 | - | |
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 271 | 303 | IPR002885 | - | |
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 305 | 339 | IPR002885 | - | |
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 340 | 374 | IPR002885 | - | |
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 375 | 408 | IPR002885 | - | |
| Mtr8g0025 | 467 | TIGRFAM | PPR: pentatricopeptide repeat domain | 170 | 198 | IPR002885 | - | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | IPR002885 | - | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | IPR002885 | - | |
| Mtr8g0025 | 467 | Pfam | PPR repeat | 229 | 258 | IPR002885 | - | |
| Mtr8g0025 | 467 | Pfam | PPR repeat | 403 | 434 | IPR002885 | - | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 233 | 267 | IPR002885 | - | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | IPR002885 | - | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | IPR002885 | - | |
| Mtr8g0025 | 467 | Pfam | PPR repeat family | 267 | 316 | IPR002885 | - | |
| Mtr8g0025 | 467 | Pfam | PPR repeat family | 337 | 386 | IPR002885 | - | |
| Mtr8g0025 | 467 | Pfam | PPR repeat family | 172 | 210 | IPR002885 | - | |
| Mtr8g0025 | 467 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 1 | 466 | - | - | |
| Mtr8g0025 | 467 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 1 | 466 | - | - | |
| Mtr8g0025 | 467 | Gene3D | Tetratricopeptide repeat domain | 365 | 439 | IPR011990 | GO:0005515 | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | IPR002885 | - | |
| Mtr8g0025 | 467 | MobiDBLite | consensus disorder prediction | 41 | 61 | - | - | |
| Mtr8g0025 | 467 | Gene3D | Tetratricopeptide repeat domain | 228 | 364 | IPR011990 | GO:0005515 | |
| Mtr8g0025 | 467 | MobiDBLite | consensus disorder prediction | 9 | 29 | - | - | |
| Mtr8g0025 | 467 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 373 | 407 | IPR002885 | - | |
| Mtr8g0025 | 467 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Mtr8g0025 | 467 | Gene3D | Tetratricopeptide repeat domain | 46 | 227 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0025 | 121 | 462 | Glycosyltransferase | AT1G05670 | 29.738 | 2.64e-39 | 149 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g0025 | - | - | adu:107458955 | 673.7 |