Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0024 ATGACTCTCGTTTCCTCGCCAACTATGGCAACCTTTTCATCCACAGCTTCCAATCAGATTCGATTTCTGCTCAACTCATTGAATCAACTCAACTTTGACTCTGTTCTTCAACAACTCTCTCAGTTCACCGAGTTTGGAACAGTTGGATGCATTTTGTTGCTACAAACCTGCTTGGATCACTTTAGTTATGTCGGAAGAGATATAAAAGATATGCAACATGAGCCAATTCTGGCGGCAGTCGTTAAGTACCTATTGGACAGACCTAACTTCAGCACAGTGTTTTCTGAGTCAATGAAGAATGTAGATGTTAATGATAGCTTTCTCAAAAGCTTTTGTAATGGATTACATTTGTCCTTATTGGAAAAAATTGCCATCAGTCTTGCTTTATCAGATTCTGACAATCCCGATGTCAGGCAATGTGGCAAGCATTTTTGCATGGCTCAGATTGAAGAATTGTGTGCCAATCCCGGTTCTTTGAGTTTCCATGAGCAAATTCACAGTGTTATCATGTTCCTCAGGCATTCTGAGGGTCTTTCTGAGCATGTAGATTCCTTTATGCAGCTATTATCGCTGGTGCAGGTCAAGGACACACCTCCTTTTGTTTTGACCCCGTTGCTACCTGATGAGATGCACGAGGCTAATATTTTACGGTGGAATTCAGAGTTCCTCCATGAGTGTGAAGAAAACGATTTTGATGCTATTTTGGCAGACATACAAAAGGAAATGAACATGGGGGACATTGTGAAGGAACTAGGTTATGGATGCACAGTTGATGTCTCGCAGTGCAAGGAAGTACTGTCACTCTTCTTACCTTTGACTGATAATATGCTCTCTAAATTACTTGGTGCTATTGCACACACGCATGCTGGGATGGAGGATAACCAGAGCACATTCTTAACTTTCGGCGCGGCCCTTGGATACAACAACCTGTCCGAGTTACCACCACTCAACTCTTGGAATATTGACGTGTTGATAGATACAGTCAAGAATCTTGCGCCACAAACCAATTGGGTCCGGGTTATTGAAAATCTTGATCATGAAGGATTTTACCTTCCCAGTGAAGAAGCATTCTCTTTTCTTATGTCTGTTTATAAACATGCCTGCAAGGAACCATTTCCCCTCCATGCCATCTATGGGTCTGTCTGGAAAAATACCGAGGGTCAGCTGTCTTTCCTCAAACATGCCGTATATGCACCACCAGAAATATTTACCTTTGCACACTCTGCGAGGCAACTGGCTTATGTTGATGCGATCAATGGCCACAAGCTTCAGAATGGACATGCAAATCATGCATGGCTGTGTATTGACCTTTTGGATGTCCTCTGCCAGCTAGCTGAGAAGGGTCATGCCAGTGTTGTTTGGTCAATCCTTGATTATCCCCTGAAACGCTGTCCAGAAATTTTGCTTCTTGGAATGGCACATGTTAATACTACTTACAACCTCTTCCAGAGAGAAGTATCTATGATTGTTTTTCCCATGATAGTAAAAAGTGATGCTGGCAGTGGAATGATTCTACACCTTTGGCACATTAATCCCAATCTGGTCCTGCGAGGCTTTATGGATTCTCAAAACATCGATGTAGACAGCATTGCGAAAATTGTGGACATCTGCCAAGAGCTTAAGATTCTATCATCAGTGGTCGAAATTATTCCCTCTTATTATAGTGTAAGGTTAGCAGCTGTTGCTTCAAGTAAAGAAATTCTTGACCTTGAGAAGTGGTTGAGTAACAACTTAACTACATACAAGGATGCCTTCTTTGAGGAGTGCCTGAAGTTCTTGAAGGAAGTCCAAGCTGGCGGATCACAAAATCTATCTGGCCAATCTTTTAATCAGCCTGGTGGTGTTCTGAATCTTTCTACTGAGACAACTGCTACATTCTTGAAGGTTCTTAAATCTCATACTGACCTGGTTACCTCTGGACAACTTTCTGAGGAGTTGGAGAGGTTGAATATATCTATTATAGATTCAAATCCAAGGCTTCAAAATAGTGAAACTACTGATTCATCTACTTCTGATACCACATTTTCGCAAGAAGTTGAAAACGAAGCAAACGGTATCTTCAAAGATATGTATCATGATGTGATTACTGTCACTAAAATGGTGGAAATGCTAATTGAACGCAAGGAATCTTCTTCGGAAAGGGAGAGATCAATTTTTGAGTGCATGATTGCAAACTTGTTTGACGAGTATAAGTTTTACCCAAGGTATCCAGAACATCAACTGAAAATTGCCGGGGTTGCCTTTGGTTCTGTGATCAAGCATCATCTTGTGACACATCTCTCTCTTGGGATAGCTCTTCGATATGTTCTCGATGCATTGCGCAAGCCTGCAGATTCTAAAATGTTCATGTTTGGAAGTTTGGCATTGGAGCAGTTTGTTGATCGTCTTGTTGAGTGGCCACAATATTGCAATCACATTTTGCAAATATCCCATTTGCGCAGCACGCATTCAGAAATAGTTACTTTAATTGAACAGGCTCTTGCTAGGATATCCTCTGGTCATACAGATGTAGATGGGATGAGCCATACTTCTGTTATCAGTAACCATAGTTCTACATTTGGTCATGTAGAGATTTCTGGCTCTGGCATCACACAACCTGGACAGAGACGTGAAAATCATTTGGATGATCGTCAGAAGACCTCTGTTGGTTCATCTACAGATATGAAGCCACCATTAGCGTCTATAGGGCAATCTCCAGTAATTACACCGACCGACGCTCCTAGTGCCAATAAGCCAATGTTATCATCATCATCTCCTGGTTTTGTCCGTCCGTCCCCATCCCCGTCCCGTGGATCTGCTTCTGCCAAGTTTGGATCTGCCTTGAATATTGAAACTTTGGTTGCTGCTGCAGAGAAAAGAGAAACTCCTATTGAGGCTCCAGGATCAGAGGTCCAGGACAAGATATCGTTTATAATTAATAATATCTCTTCTACTAACATCGAAGCCAAATCAAAGGAGCTCACAGAAATTTTGAAAGAGCAGTACTATCCATGGTTTGCCCAGTATATGGTCATGAAAAGAGCAAGCATTGAGCCGAATTTCCATGACATGTACCTGAAATTTCTGGACAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTGTTCAGGCAACATACGAAAATTGCAAGGTTCTTTTAGGATCAGAACTCATAAAATCAAGTTCAGAAGAGCGTTCCTTGCTTAAAAATCTTGGTAGCTGGCTTGGGAAGTTGACAATTGGACGGAATCAGGTTTTGAGGGCTCGTGAAATAGATCCCAAATCTCTGATTATAGAGGCATATGAGAAGGGGCTGATGATTGCTGTTATTCCGTTTACTTCAAAGGTCCTTGAACCATGCCAAAGCAGTCTTGCTTATCAACCCCCTAATCCTTGGACCATGGGCATTTTAGGATTGCTTGCTGAGATTTGTTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATACAAAAATCTTGGTGTAGATATGAAGGATGTCACACCAACTTCTCTTCTGAAGGATCGTAAAAGAGAAATTGAAGGAAATCCCGATTTCTCTAATAAAGATGTTGGGGCATCTCAATCACAAATGATTTCTGATATAAAACCTGGCCTTGTTCCTCCAGTAAATCAGGTGGAGCTACCGCCTGAAGTCTCCAATCCATCTAATATGCTGTCTCAGTATGCTGGTTCTCTTCATATTTCCACCGGAACGATGATGGAAGATGAGAAAGTAGCACCTCTGGGCTTGCCTGATCAACTACCTTCTGCTCAAGGACTGATACAAGCAAATACTACCCCAGCATCTTTCCAGCTCCCAACTCAGATACAAAGTATTGGAACTCATGTTATTATAAATCCAAAGCTCAGTGGTTCTGGATTACAGATTCATTTCCAAAGAGTGGTGCCCATTGCGATGGACAGAGCCATCAAAGATATAGTGTCCAGTATTGTGCAGCGCAGTGTTTCCATAGCAACCCAAACAACAAAGGAACTTGTTTTGAAGGATTATGCCATGGAATCAGAGGAGAAACGTATTAAAAATGCTGCACACTTGATGGTTGCTAGTCTGGCTGGGAGTTTGGCTCACGTCACATGCAAAGAACCGTTACGGACATCAATATCAAATCAGCTGAGGACTGCACTTCAGAATTTAGGTATTGCAAATGAAATTTTGGAACCAGCTGTGCAACTTGTCACCAATGATAATCTAGATCTTGGATGCGCAGTCATTGAACATGCCGCTACTGACAAGGCAATAAACACCATCGATACAGAGATTAGTCAACAGCTTTCGTTGAGAAAAAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATGCAAATTTGTATCCACAAGGTTCTATGGGTGGTGTTCCAGAGCCCCTGCGCCCCAAACCTGGTCAGCTGTCCCTGTCACAACAGCGTGTCTATGAGGACTTTGTTCGACTTCCTTGGCAAAACCAGTCTAGCCAGAGCTCACATTCAATGTCTGCTGGCGCTGCTGTTCAATCTGCCACTAGTGGTCTCACTGGCACAAATGGTCCTGCACCGGGACAGATAAACCCTGGTTACTCCCTAAACACAGGATATGAGGGTGTCTCTCGACCGCTAGATGATATGCCAGAATCTAATTATGCTCAACATTTTAGTGCTTCGCCAATTCACATTAGAGCAGCTGACAATGTTTCCCAGCAGAGTTTGGAGAAAGACTCTGTTGCCTCATTTCCTTCAACTGCTTCCACCCCTGAGTTACACACGATGGATTCTTCAGATGCTGGGAAAGAATCCGGAGCTTCTTCACAACCACTGATATCATCCGGTGCTGTTGAGCGCATTGGAAGTAGCTTCTTGGAACCCTCTCTCACTACAAGGGATGCTCTGGATAAATACCAAATTGTCGCACAAAAGTTGGAAGCTTTGGTCAACAATGATTCGAGGGAAGCAGATATTCAGGGTGTCATTTCTGAGGTACCTGAGATCATACTCAGATGTGTTAGTCGAGATGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGCTTATACGACAATGCTTCAAACAACGTTCATGTTTGTGCTTATCTTGCAATCCTGACTGCCATTCGCGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGTTGGGTAATTTACTCGGAAGAAGAAAGGAAATATAATAAAGATATTACTGTTGGTCTCATTGGCAGTGAACTGCTAAATCTAACCGAGTACAATGTTCATTTGGCAAAACTTATTGATGGGGGAAGAAATAAGGCTGCTACAGAGTTTTCAATATCTCTTCTTCAAACTTTGGTCATCGAGGAACCGAAAGTTATTTCTGAACTTCACAATCTTATTGATGCTTTGGCAAAGCTTGCCACAAAGCCTGGATATCCCGAATCGTTACAACAACTTCTTGAGATGATCAAGAACCCTGCTGCTCTATCTGCTAGTAATGTTGGAAAGGAGGATAAGGTGAGGCAATCAAGAGACAATAAGGGTCCTGGTCTGCAAGTTGCAAACAGGGAAGCATTGAACATTGTAGATTCTGTTGAACCTGATCCTGCTGGATTCCGTGAACAGGTTTCCATGTTGTTTGCTGAATGGTATAGGATATGTGAACTTCCCGGTGCCAATGATACAGCTTCTACCCACTTCATCGTGCAGTTGCACCAGAGTGGGCTGCTTAAGGGAGATGATATGCCAGATCGCTTTTTCCGCCTGTTGATGGAAATTGCAGTTGCACATTGCTTATCCACTGAGGGGATTAATTCAGGGGCACTGCAATCTCCTCAACAGATGCCGACAATGTCATTTCTCGCAATTGATATTTATGCAAAGCTTGTCTTCTCGATTTTGAAGGGATCAAGCAAACTTCTCTCCAAGATTCTGGCAGTTACCGTCAGATTCATTGTAAAAGATGCAGAGGAGAAGAAGGTTTCTTTTAATCCAAGACCATTTTTCAGATTGTTCATCAATTGGCTTCTGGATCTCGGCTCACTTGAGCCTGTTACTGATGGTGCAAATCTGCAGATTTTGACTGCTTTTGCCAATGCATTTCATGCTCTACAGCCACTCAAAGTTCCTGGATTCAGTTTTGCCTGGCTGGAGTTGGTTAGTCATAGGAGCTTCATGCCAAAAATGCTGACTGGTAATGGTCAAAAAGGCTGGCCTTATATCCAAAGGTTACTTGTAGATTTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCCGAACTAGGAGATCCGGTCCGTGTTCTCTATAAAGGCACACTTAGGGTGCTCTTGGTGCTTCTTCATGACTTTCCAGAGTTCCTATGTGACTATCACTTTACCTTTTGTGATGTTATTCCTCCAAGTTGCATTCAGATGCGAAATATCATCCTAAGTGCATTTCCGCGTAGTATGAGGCTGCCAGATCCTTCAACTCCAAATTTGAAGATTGATTTGCTTCAAGAAATAACTCAATCCCCTCGTATTCTTTCTGAGGTTGACGCTGTATTGAGAGCAAAGCAGATGAAGGCTGACATAGATGAATACCTTAAGACAAGGCAACAGAGTTCACCATTTTTATCTGAATTAAAAGAGAAGCTACTCCTCTCACCCAATGAAGCTGCCTCTGCCGGCACTCGTTACAATGTGCCATTAATCAACTCCCTTGTACTGTATGTCGGGATGCAGAATGTTTGGGCTATTAATGTACAGGCAATCCAGCAGCTCGAGGGACGAACTCCCCATGCACAATCAGCAACAAATGCATTCCAACAGCATCTATATTCTCCTACAAATACAGATGTTATCGCTGCTTTGGATATTTTCCAGACACTAATCAATGACTTGGACACTGAAGGACGCTACCTTTTCCTAAATGCTGTTGCTAACCAACTACGTTATCCCAATACTCACACACACTACTTCTCCTTTGTCATCCTTTACCTGTTTACAGAATCAAACCAGGAAATAATTCAAGAACAAATTACAAGAGTCTTGCTAGAACGCCTCATTGTAAACCGACCTCATCCATGGGGCCTCCTCATTACTTTCATTGAGCTGATCAAGAACCTAAGGTATAATTTCTGGAACCGATCTTTCATAAGATGCGCACCAGAGATCGAAAAGCTTTTTGAATCAGTCTCGAGATCTTGTGGAGGTCCAAAACCTGTGGATGAGAGTATGGTCTCGGGTTGGGGTCTGACATAA 7200 0.4243 MTLVSSPTMATFSSTASNQIRFLLNSLNQLNFDSVLQQLSQFTEFGTVGCILLLQTCLDHFSYVGRDIKDMQHEPILAAVVKYLLDRPNFSTVFSESMKNVDVNDSFLKSFCNGLHLSLLEKIAISLALSDSDNPDVRQCGKHFCMAQIEELCANPGSLSFHEQIHSVIMFLRHSEGLSEHVDSFMQLLSLVQVKDTPPFVLTPLLPDEMHEANILRWNSEFLHECEENDFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEVLSLFLPLTDNMLSKLLGAIAHTHAGMEDNQSTFLTFGAALGYNNLSELPPLNSWNIDVLIDTVKNLAPQTNWVRVIENLDHEGFYLPSEEAFSFLMSVYKHACKEPFPLHAIYGSVWKNTEGQLSFLKHAVYAPPEIFTFAHSARQLAYVDAINGHKLQNGHANHAWLCIDLLDVLCQLAEKGHASVVWSILDYPLKRCPEILLLGMAHVNTTYNLFQREVSMIVFPMIVKSDAGSGMILHLWHINPNLVLRGFMDSQNIDVDSIAKIVDICQELKILSSVVEIIPSYYSVRLAAVASSKEILDLEKWLSNNLTTYKDAFFEECLKFLKEVQAGGSQNLSGQSFNQPGGVLNLSTETTATFLKVLKSHTDLVTSGQLSEELERLNISIIDSNPRLQNSETTDSSTSDTTFSQEVENEANGIFKDMYHDVITVTKMVEMLIERKESSSERERSIFECMIANLFDEYKFYPRYPEHQLKIAGVAFGSVIKHHLVTHLSLGIALRYVLDALRKPADSKMFMFGSLALEQFVDRLVEWPQYCNHILQISHLRSTHSEIVTLIEQALARISSGHTDVDGMSHTSVISNHSSTFGHVEISGSGITQPGQRRENHLDDRQKTSVGSSTDMKPPLASIGQSPVITPTDAPSANKPMLSSSSPGFVRPSPSPSRGSASAKFGSALNIETLVAAAEKRETPIEAPGSEVQDKISFIINNISSTNIEAKSKELTEILKEQYYPWFAQYMVMKRASIEPNFHDMYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEICSMPNLKMNLKFDIEVLYKNLGVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGASQSQMISDIKPGLVPPVNQVELPPEVSNPSNMLSQYAGSLHISTGTMMEDEKVAPLGLPDQLPSAQGLIQANTTPASFQLPTQIQSIGTHVIINPKLSGSGLQIHFQRVVPIAMDRAIKDIVSSIVQRSVSIATQTTKELVLKDYAMESEEKRIKNAAHLMVASLAGSLAHVTCKEPLRTSISNQLRTALQNLGIANEILEPAVQLVTNDNLDLGCAVIEHAATDKAINTIDTEISQQLSLRKKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSAGAAVQSATSGLTGTNGPAPGQINPGYSLNTGYEGVSRPLDDMPESNYAQHFSASPIHIRAADNVSQQSLEKDSVASFPSTASTPELHTMDSSDAGKESGASSQPLISSGAVERIGSSFLEPSLTTRDALDKYQIVAQKLEALVNNDSREADIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNNVHVCAYLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKDITVGLIGSELLNLTEYNVHLAKLIDGGRNKAATEFSISLLQTLVIEEPKVISELHNLIDALAKLATKPGYPESLQQLLEMIKNPAALSASNVGKEDKVRQSRDNKGPGLQVANREALNIVDSVEPDPAGFREQVSMLFAEWYRICELPGANDTASTHFIVQLHQSGLLKGDDMPDRFFRLLMEIAVAHCLSTEGINSGALQSPQQMPTMSFLAIDIYAKLVFSILKGSSKLLSKILAVTVRFIVKDAEEKKVSFNPRPFFRLFINWLLDLGSLEPVTDGANLQILTAFANAFHALQPLKVPGFSFAWLELVSHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAVLRAKQMKADIDEYLKTRQQSSPFLSELKEKLLLSPNEAASAGTRYNVPLINSLVLYVGMQNVWAINVQAIQQLEGRTPHAQSATNAFQQHLYSPTNTDVIAALDIFQTLINDLDTEGRYLFLNAVANQLRYPNTHTHYFSFVILYLFTESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNLRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWGLT* 2400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0024 2399 MobiDBLite consensus disorder prediction 883 935 - -
Mtr8g0024 2399 MobiDBLite consensus disorder prediction 1487 1527 - -
Mtr8g0024 2399 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 664 829 IPR032193 -
Mtr8g0024 2399 Coils Coil 1626 1646 - -
Mtr8g0024 2399 Gene3D - 662 832 IPR038535 -
Mtr8g0024 2399 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 488 631 IPR032194 -
Mtr8g0024 2399 MobiDBLite consensus disorder prediction 1562 1602 - -
Mtr8g0024 2399 Pfam CCR4-Not complex component, Not1 1996 2378 IPR007196 -
Mtr8g0024 2399 Gene3D - 929 1179 - -
Mtr8g0024 2399 Gene3D - 2139 2383 - -
Mtr8g0024 2399 MobiDBLite consensus disorder prediction 1487 1543 - -
Mtr8g0024 2399 Gene3D - 1847 2138 - -
Mtr8g0024 2399 MobiDBLite consensus disorder prediction 856 935 - -
Mtr8g0024 2399 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 957 1177 IPR032191 -
Mtr8g0024 2399 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1295 1436 IPR024557 -
Mtr8g0024 2399 PANTHER BNACNNG58980D PROTEIN 13 2396 - -
Mtr8g0024 2399 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 13 2396 IPR040398 GO:0017148|GO:0030015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0024 K12604 - gmx:100783935 3908.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0024 8 293071 314787 Mtr8g0024 8 293071 314787 ECH